destvi_utils/pyproject.toml at main · YosefLab/destvi_utils · GitHub

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[tool.isort]
include_trailing_comma = true
multi_line_output = 3
profile = "black"
skip_glob = ["docs/*", "destvi_utils/__init__.py"]

[tool.poetry]
authors = ["Can Ergen <canergen.ac@gmail.com>", "Romain Lopez <romain_lopez@gmail.com>"]
classifiers = [
  "Development Status :: 5 - Production/Stable",
  "Intended Audience :: Science/Research",
  "Natural Language :: English",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Python :: 3.13",
  "Operating System :: MacOS :: MacOS X",
  "Operating System :: Microsoft :: Windows",
  "Operating System :: POSIX :: Linux",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
]
description = "Utilities for destVI package."
documentation = "https://destvi_utils.readthedocs.io/"
homepage = "https://github.com/YosefLab/destvi_utils"
license = "BSD-3-Clause"
name = "destvi_utils"
packages = [
  {include = "destvi_utils"},
]
readme = "README.md"
version = "0.2.0"

[tool.poetry.dependencies]
adjustText = ">=0.7.1"
anndata = ">=0.7.5"
black = {version = ">=20.8b1", optional = true}
cmap2d = {git = "https://github.com/cane11/cmap2d", tag = "v1.0"}
codecov = {version = ">=2.0.8", optional = true}
flake8 = {version = ">=3.7.7", optional = true}
gseapy = {version = ">=0.10.2"}
hotspotsc = {version = ">=1.0"}
importlib-metadata = {version = "^1.0", python = "<3.8"}
ipython = ">=7.1.1"
isort = {version = ">=5.7", optional = true}
jupyter = {version = ">=1.0", optional = true}
loompy = {version = ">=3.0.6", optional = true}
matplotlib = '>=3.2.0'
nbconvert = {version = ">=5.4.0", optional = true}
nbformat = {version = ">=4.4.0", optional = true}
nbsphinx = {version = "*", optional = true}
nbsphinx-link = {version = "*", optional = true}
pre-commit = {version = ">=2.7.1", optional = true}
pydata-sphinx-theme = {version = ">=0.4.0", optional = true}
pytest = {version = ">=4.4", optional = true}
python = ">=3.11.0,<4.0"
igraph = {version = "*"}
scanpy = ">=1.6,<2.0"
scanpydoc = {version = ">=0.5", optional = true}
scvi-tools  = {version = ">=1.4.1"}
sphinx = {version = ">=4.1,<4.4", optional = true}
sphinx-autodoc-typehints = {version = "*", optional = true}
sphinx-rtd-theme = {version = "*", optional = true}
typing_extensions = {version = "*", python = "<3.8"}
markdown = "3.3.4"

[tool.poetry.extras]
dev = ["black", "pytest", "flake8", "codecov", "loompy", "jupyter", "nbformat", "nbconvert", "pre-commit", "isort"]
docs = [
  "sphinx",
  "scanpydoc",
  "nbsphinx",
  "nbsphinx-link",
  "ipython",
  "pydata-sphinx-theme",
  "typing_extensions",
  "sphinx-autodoc-typehints",
  "sphinx-rtd-theme",
]

[tool.poetry.dev-dependencies]

[build-system]
build-backend = "poetry.masonry.api"
requires = [
  "poetry>=1.0",
  "setuptools", # keep it here or "pip install -e" would fail
]