agtools/pyproject.toml at main · Vini2/agtools · GitHub

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[build-system]
requires = ["flit_core >=3.11,<4"]
build-backend = "flit_core.buildapi"

[project]
name = "agtools"
authors = [{name = "Vijini Mallawaarachchi", email = "viji.mallawaarachchi@gmail.com"}]
keywords = ["metagenomics", "assembly", "graphs", "bioinformatics"]
readme = "README.md"
license = { file = "LICENSE" }
requires-python = ">=3.10"
dynamic = ["version", "description"]
dependencies = ["click", "loguru", "bidict", "biopython", "igraph", "pycairo", "pandas"]

[project.urls]
Home = "https://agtools.readthedocs.io"

[project.sdist]
include = ["requirements.txt", "src/*", "pyproject.toml"]
exclude = ["doc/*", "tests*"]

[project.scripts]
agtools = "agtools.cli:main"

[project.optional-dependencies]
test = [
    "pytest",
    "pytest-cov",
    "pytest-xdist",
]
dev = [
    "black",
    "click",
    "flit",
    "isort==5.13.2",
    "pytest",
    "pytest-cov",
    "pytest-xdist",
    "ruff",
]

[tool.black]
line-length = 88
target-version = ["py310"]

[tool.isort]
profile = "black"
line_length = 88

[tool.ruff]
line-length = 88
target-version = "py310"
src = ["src", "tests"]
exclude = [
    "demo",
    "docs",
    "profiling",
]

[tool.ruff.lint]
select = [
    "E9",
    "F63",
    "F7",
    "F82",
]