diff --git a/.gitignore b/.gitignore index b7def0a..743c3a5 100644 --- a/.gitignore +++ b/.gitignore @@ -10,3 +10,4 @@ wheels/ .venv .vscode/ +.env diff --git a/README.md b/README.md index 184e892..8d37d21 100644 --- a/README.md +++ b/README.md @@ -145,3 +145,18 @@ Run tests $ uv run pytest tests ``` +## Experimental AI Mode +An optional mode to sidestep manually encoding logic conversions between metadata formats by leveraging LLMs to automate the process: + +``` +$ codemeticulous ai-convert --model --from codemeta --to cff codemeta.json > CITATION.cff +``` + +Currently, it can convert between known formats (listed in ```standards.py```), outputting structured data which is then deserialized back into codemeticulous/pydantic objects. + +*Note: ensure that ```.env``` contains the necessary API keys to call the LLM.* + +Run experiemental AI tests +``` +$ uv run pytest tests_llm/ +``` diff --git a/codemeticulous/ai_convert.py b/codemeticulous/ai_convert.py new file mode 100644 index 0000000..47d8097 --- /dev/null +++ b/codemeticulous/ai_convert.py @@ -0,0 +1,138 @@ +import litellm +import logging +import re +import json +import ast +from pathlib import Path +from pydantic import BaseModel, ValidationError +from codemeticulous.standards import STANDARDS +from codemeticulous.prompt_strategies import DefaultPrompt +from codemeticulous.generate_schemas import check_schema + +logging.basicConfig(level=logging.INFO) + +# Toggle for additional llm debugging +# litellm._turn_on_debug() + +def extract_json(llm_output: str) -> dict: + # Try to extract JSON from markdown code block first + json_match = re.search(r'```json\s*(.*?)\s*```', llm_output, re.DOTALL) + if json_match: + json_str = json_match.group(1) + else: + # Fall back to extracting the first JSON object from the string + json_match = re.search(r'\{.*\}', llm_output, re.DOTALL) + json_str = json_match.group(0) if json_match else llm_output + + try: + return json.loads(json_str) + except json.JSONDecodeError: + logging.error(f"ERROR: failed to decode JSON from LLM output: {json_str}") + # Try to fix single-quoted keys/values produced by the LLM + return ast.literal_eval(json_str) + + +def structured_completion(llm_model: str, messages: list, target_model: BaseModel) -> tuple[BaseModel | None, dict]: + max_retries = 3 # sets limit on retries if llm's output has validation errors + prompt_tokens = 0 + completion_tokens = 0 + + for attempt in range(max_retries): + try: + response = litellm.completion( + model=llm_model, + messages=messages, + temperature=0.3 + ) + # try: + # total_cost += litellm.completion_cost(completion_response=response) + # except Exception: + # pass + prompt_tokens += getattr(response.usage, "prompt_tokens", 0) or 0 + completion_tokens += getattr(response.usage, "completion_tokens", 0) or 0 + + output = extract_json(response.choices[0].message.content) + validated_model = target_model(**output) + usage = { + # "cost": round(total_cost, 6), + "prompt_tokens": prompt_tokens, + "completion_tokens": completion_tokens, + } + return validated_model, usage + except ValidationError as e: + logging.warning(f"Pydantic validation error on attempt {attempt + 1}: {e}") + + if attempt < max_retries - 1: + failing_fields = [err["loc"][0] for err in e.errors() if err["loc"]] + error_msg = { + "role": "user", + "content": f""" + The previous JSON output had validation errors. Return the same JSON with ONLY these fields corrected — do not change anything else: + + Failing fields: {failing_fields} + + Errors: + {str(e)} + """ + } + messages.append({"role": "assistant", "content": response.choices[0].message.content}) + messages.append(error_msg) + else: + logging.error(f"ERROR: LLM had validation failures after {max_retries}") + raise + except Exception as e: + logging.error(f"ERROR: LLM completion call failed: {e}") + raise + + +def get_examples(crosswalk: str, num: int = 1): + PATH = Path(__file__).parent.parent / "tests_llm" / "logs" / "passed_cases.json" + raw = PATH.read_text() if PATH.exists() else "" + cases = json.loads(raw) if raw.strip() else [] + return [c for c in cases if c["source:target"] == crosswalk][:num] #TODO: randomize example selection + + +def convert_ai(llm_model: str, source_format: str, target_format: str, source_data): + """ + Automate metadata standard conversion using LLM and canonical representation. + + Args: + - llm_model: LLM model string (e.g., "openrouter/openai/gpt-4o"). + - source_format: string representation of the source metadata standard. + - target_format: string representation of the target metadata standard. + - source_data: dict or pydantic.BaseModel instance representing the source metadata + """ + + # Build prompt messages using pydantic schemas and the source data + source_model = STANDARDS[source_format]["model"] + target_model = STANDARDS[target_format]["model"] + + # Creates pydantic model instance of source data + if isinstance(source_data, dict): + source_instance = source_model(**source_data) + elif isinstance(source_data, source_model): + source_instance = source_data + + # Create summarized schema of source pydantic model according to data instance + source_schema_dict = check_schema(source_format, source_instance) + source_schema = json.dumps(source_schema_dict, indent=2) + + target_schema = check_schema(target_format) + target_schema = json.dumps(target_schema, indent=2) + + strategy = DefaultPrompt() + messages = strategy.generate_system_prompt(source_schema, target_schema) + + # inject few shot examples of past conversions, then end with the actual source data + examples = get_examples(f"{source_format}:{target_format}") + if examples: + messages.append({"role": "system", "content": f"Here are some examples of correct conversions between {source_format} and {target_format}:"}) + + for ex in examples: + messages.append({"role": "user", "content": "SOURCE_DATA:\n" + json.dumps(ex["source_metadata"])}) + messages.append({"role": "assistant", "content": json.dumps(ex["llm_output"])}) + + messages.append({"role": "user", "content": "SOURCE_DATA:\n" + source_instance.json()}) + target_data, usage = structured_completion(llm_model, messages, target_model) + + return target_data, usage \ No newline at end of file diff --git a/codemeticulous/cli.py b/codemeticulous/cli.py index a00f010..4a48490 100644 --- a/codemeticulous/cli.py +++ b/codemeticulous/cli.py @@ -3,9 +3,12 @@ import click import json import yaml +from dotenv import load_dotenv from codemeticulous.convert import STANDARDS, convert as _convert - +from codemeticulous.ai_convert import convert_ai as _convert_ai +from codemeticulous.generate_schemas import generate_schemas as _generate_schemas +load_dotenv() @click.group() def cli(): @@ -104,6 +107,95 @@ def validate(format_name, input_file, verbose): traceback.print_exc() +@cli.command() +@click.option( + "-m", + "--model", + "llm_model", + type=str, + required=True, + help="LLM model to use for conversion (e.g., 'openrouter/openai/gpt-4o')", +) +def generate_schemas(llm_model: str): + try: + _generate_schemas(llm_model) + except Exception as e: + click.echo(f"Error from attempting to generate and cache schemas: {str(e)}", err=True) + + +@cli.command() +@click.option( + "-m", + "--model", + "llm_model", + type=str, + required=True, + help="LLM model to use for conversion (e.g., 'openrouter/openai/gpt-4o')", +) +@click.option( + "-f", + "--from", + "source_format", + type=click.Choice(STANDARDS.keys()), + required=True, + help="Source format", +) +@click.option( + "-t", + "--to", + "target_format", + type=click.Choice(STANDARDS.keys()), + required=True, + help="Target format", +) +@click.option( + "-o", + "--output", + "output_file", + type=click.File("w"), + default=None, + help="Output file name (by default prints to stdout)", +) +@click.option( + "-v", + "--verbose", + is_flag=True, + default=False, + help="Print verbose output", +) +@click.argument("input_file", type=click.Path(exists=True)) +def ai_convert(llm_model: str, source_format: str, target_format: str, input_file, output_file, verbose): + try: + input_data = load_file_autodetect(input_file) + except Exception as e: + click.echo(f"Failed to load file: {input_file}. {str(e)}", err=True) + if verbose: + traceback.print_exc() + try: + converted_data, _ = _convert_ai(llm_model, source_format, target_format, input_data) + except Exception as e: + click.echo(f"Error during AI-assisted conversion: {str(e)}", err=True) + if verbose: + traceback.print_exc() + return + + output_format = STANDARDS[target_format]["format"] + + try: + output_data = dump_data(converted_data, output_format) + except Exception as e: + click.echo(f"Error during serialization: {str(e)}", err=True) + if verbose: + traceback.print_exc() + return + + if output_file: + output_file.write(output_data) + click.echo(f"Data written to {output_file.name}") + else: + click.echo(output_data) + + def dump_data(data, format): if format == "json": return data.json() @@ -136,4 +228,4 @@ def load_file_autodetect(file_path): else: raise ValueError(f"Unsupported file extension: {ext}.") except Exception as e: - raise ValueError(f"Failed to load file: {file_path}. {str(e)}") + raise ValueError(f"Failed to load file: {file_path}. {str(e)}") \ No newline at end of file diff --git a/codemeticulous/convert.py b/codemeticulous/convert.py index 6ee38b7..a8f7962 100644 --- a/codemeticulous/convert.py +++ b/codemeticulous/convert.py @@ -4,28 +4,7 @@ from codemeticulous.codemeta.convert import canonical_to_codemeta, codemeta_to_canonical from codemeticulous.datacite.convert import canonical_to_datacite, datacite_to_canonical from codemeticulous.cff.convert import canonical_to_cff, cff_to_canonical - - -STANDARDS = { - "codemeta": { - "model": CodeMeta, - "format": "json", - "to_canonical": codemeta_to_canonical, - "from_canonical": canonical_to_codemeta, - }, - "datacite": { - "model": DataCite, - "format": "json", - "to_canonical": datacite_to_canonical, - "from_canonical": canonical_to_datacite, - }, - "cff": { - "model": CitationFileFormat, - "format": "yaml", - "to_canonical": cff_to_canonical, - "from_canonical": canonical_to_cff, - }, -} +from codemeticulous.standards import STANDARDS def to_canonical(source_format: str, source_data): diff --git a/codemeticulous/datacite/convert.py b/codemeticulous/datacite/convert.py index b8b83fa..09fb2eb 100644 --- a/codemeticulous/datacite/convert.py +++ b/codemeticulous/datacite/convert.py @@ -384,10 +384,10 @@ def canonical_to_datacite( # TODO: though, it may be possible to use the following codemeta fields: # hasPart, isPartOf, readme, sameAs, review, releaseNotes # relatedIdentifiers=data.relatedLink, - sizes=[data.fileSize] if data.fileSize else None, - formats=codemeta_language_fileformat_to_datacite_format( - data.programmingLanguage, data.fileFormat - ), + # sizes=[data.fileSize] if data.fileSize else None, + # formats=codemeta_language_fileformat_to_datacite_format( + # data.programmingLanguage, data.fileFormat + # ), version=str(data.version) if data.version else None, rightsList=codemeta_license_to_datacite_rights(data.license), descriptions=descriptions, diff --git a/codemeticulous/generate_schemas.py b/codemeticulous/generate_schemas.py new file mode 100644 index 0000000..b36b290 --- /dev/null +++ b/codemeticulous/generate_schemas.py @@ -0,0 +1,102 @@ +import re +import csv +import json +import logging +import litellm +from pathlib import Path +from codemeticulous.standards import STANDARDS + + +def llm_descriptions(model_name: str, data, llm_model: str) -> str: + prompt = f""" + For a Pydantic model '{model_name}', we have a list of lists, each containing a field and their field type. + + Please provide: + 1. A more intuitive, human-readable type for each field (e.g., convert "typing.Optional[str]" to "Text", "typing.List[str]" to "List of Text", URLs to "URL", dates to "Date", etc.) + 2. A brief 1-2 sentence description of each field in relation to the model + + When determining intuitive types and descriptions: + - For example with CodeMeta, reference Schema.org vocabulary where applicable (e.g., use Schema.org terms like "Text", "URL", "Date", "Person", "Organization") + - Simplify Python typing syntax to be more readable (Optional means the field can be null, List means multiple values) + - Use semantic type names that reflect the meaning rather than the implementation to be more intuitive. + + Your response should be a valid JSON array where each element is a list containing: [field_name, intuitive_type, description]. + Do not include outside explanatory text or formatting syntax so your response can be piped into 'json.loads()'. + + Here is the data: + {data} + """ + + try: + response = litellm.completion( + messages=[{"role": "user", "content": prompt}], + model=llm_model + ) + return response.choices[0].message.content.strip() + except Exception as e: + print(f"ERROR: structured output failed: {e}") + raise + +# TODO: move toggle to use defined schema json files here +def generate_schemas(llm_model: str): + # iterate through all schemas in STANDARDS and create csv files to cache + for format, info in STANDARDS.items(): + pydantic_model = info["model"] + cache_directory = Path(__file__).parent.parent / "schema_cache" + file = cache_directory / f"{format}.csv" + + if file.exists(): + continue + + fields = [] + + for field_name, model_field in pydantic_model.__fields__.items(): + field_type = model_field.annotation + field = [field_name, field_type] + fields.append(field) + + llm_response = llm_descriptions(pydantic_model.__name__, fields, llm_model) + match = re.search(r'\{.*\}|\[.*\]', llm_response, re.DOTALL) # clean up LLM response + + if match: + llm_response = match.group(0) + + try: + field_descriptions = json.loads(llm_response) + + # generate a csv retaining the final schema information and store to reuse + with open(file, "w", newline='') as f: + writer = csv.writer(f) + writer.writerow(["Field", "Type", "Description"]) + writer.writerows(field_descriptions) + except Exception as e: + logging.error(f"ERROR: failed to create list from llm response: ", e) + raise + + +def check_schema(model: str, flag: bool = False): + schema_file = STANDARDS[model]["schema"] + + if flag and schema_file is not None: # iterate through fields if there's an instance that calls for the schema to be pruned + with open(schema_file, 'r') as f: + schema = json.load(f) + + return schema + + else: # check for schema_cache directory, return the data file if its exists + cache_directory = Path(__file__).parent.parent / "schema_cache" + file = cache_directory / f"{model}.csv" + + if file.exists(): + with open(file, 'r') as f: + reader = csv.DictReader(f) + fields = [dict(row) for row in reader] + + return { + "model_name": model, + "fields": fields + } + + else: # if it doesn't exist, use LLM to generate a csv of schema information + logging.info("ERROR: schemas were not generated yet, call uv run codemeticulous generate-schemas.") + raise \ No newline at end of file diff --git a/codemeticulous/prompt_strategies.py b/codemeticulous/prompt_strategies.py new file mode 100644 index 0000000..ef9903d --- /dev/null +++ b/codemeticulous/prompt_strategies.py @@ -0,0 +1,38 @@ +from abc import ABC, abstractmethod + +class PromptStrategy(ABC): + @abstractmethod + def generate_system_prompt(self, source_instance) -> list: + pass + + +class DefaultPrompt(PromptStrategy): + PROMPT = """ + Your task is to convert source metadata from one format to another using the provided schemas. + + INPUTS PROVIDED: + - Source data: A Pydantic model instance containing the original metadata + - Source schema: A JSON object containing the source Pydantic model's fields and descriptions + - Target schema: The Pydantic model definition for the output format + + INSTRUCTIONS: + 1. Analyze the source data and understand its structure. + 2. Extract and map the relevant fields from the source data to the corresponding fields in the target format. + 3. Transform data types and structures as needed to match the target schema requirements which could either be one-to-one or complex transformations. + 4. Instantiate the target model using the mapped and transformed data, so that a new instance of the target Pyndantic model can be created. + + OUTPUT REQUIREMENTS: + - Return ONLY a raw JSON without any further encoding such as escaping quotes. + - Ensure all required fields in the target schema are populated + - Use appropriate data types as defined in the target schema + + The final output must be an instance of the target model schema that can be successfully validated by Pydantic. + """ + + def generate_system_prompt(self, source_schema, target_schema) -> list: + + return [ + {"role": "system", "content": self.PROMPT}, + {"role": "user", "content": "SOURCE SCHEMA\n" + source_schema}, + {"role": "user", "content": "TARGET_MODEL:\n" + target_schema} + ] \ No newline at end of file diff --git a/codemeticulous/standards.py b/codemeticulous/standards.py new file mode 100644 index 0000000..aa0ad5a --- /dev/null +++ b/codemeticulous/standards.py @@ -0,0 +1,30 @@ +from codemeticulous.codemeta.models import CodeMeta +from codemeticulous.datacite.models import DataCite +from codemeticulous.cff.models import CitationFileFormat +from codemeticulous.codemeta.convert import canonical_to_codemeta, codemeta_to_canonical +from codemeticulous.datacite.convert import canonical_to_datacite, datacite_to_canonical +from codemeticulous.cff.convert import canonical_to_cff, cff_to_canonical + +STANDARDS = { + "codemeta": { + "model": CodeMeta, + "format": "json", + "to_canonical": codemeta_to_canonical, + "from_canonical": canonical_to_codemeta, + "schema": None + }, + "datacite": { + "model": DataCite, + "format": "json", + "to_canonical": datacite_to_canonical, + "from_canonical": canonical_to_datacite, + "schema": "schema/datacite/schema46.json" + }, + "cff": { + "model": CitationFileFormat, + "format": "yaml", + "to_canonical": cff_to_canonical, + "from_canonical": canonical_to_cff, + "schema": "schema/cff/1.2.0/schema.json" + }, +} \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml index 5056725..663f31b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,6 +6,8 @@ readme = "README.md" requires-python = ">=3.10" dependencies = [ "click>=8.1.7", + "instructor>=1.13.0", + "litellm>=1.77.1", "pydantic2-schemaorg==0.2.0", "pydantic>=2.9.2", "pyyaml>=6.0.2", @@ -19,6 +21,7 @@ dev = [ "black>=24.8.0", "datamodel-code-generator>=0.26.2", "pytest>=8.3.3", + "pytest-check>=2.8.0", ] [build-system] @@ -30,4 +33,4 @@ include-package-data = false [tool.setuptools.packages.find] include = ["codemeticulous", "codemeticulous.*"] -exclude = ["tests*", "schema"] \ No newline at end of file +exclude = ["tests*", "schema"] diff --git a/schema_cache/cff.csv b/schema_cache/cff.csv new file mode 100644 index 0000000..fc956c3 --- /dev/null +++ b/schema_cache/cff.csv @@ -0,0 +1,22 @@ +Field,Type,Description +abstract,Text,A short summary of the work. This helps users quickly understand the software's purpose. +authors,List of Person or Organization,"The creators of the software. Each author can be an individual person or a group, such as a research institution or company." +cff_version,Text,The version of the Citation File Format standard used in this file. It ensures the file is interpreted correctly by tools. +commit,Text,The specific commit hash from the version control system for this version of the software. This provides a precise reference to the code. +contact,List of Person or Organization,The individuals or groups to contact for support or inquiries about the software. This helps direct communication to the right people. +date_released,Date,The date when this version of the software was made publicly available. This corresponds to the Schema.org 'datePublished' property. +doi,DOI,The Digital Object Identifier (DOI) for the software version. A DOI provides a persistent and unique link to the work. +identifiers,List of Identifiers,"A list of other unique identifiers for the software, such as a SWHID or an archive URL. This helps in uniquely identifying and locating the work." +keywords,List of Text,A list of keywords or tags that describe the software. These help with discovery and categorization. +license,License,"The license under which the software is provided, typically as a standard SPDX identifier. This informs users of the permissions and restrictions." +license_url,URL,A URL pointing to the full text of the software's license. This provides users with the specific legal terms. +message,Text,"A message to the human reader of the file to let them know what to do with the citation metadata. Example: ""If you use this software, please cite it using the metadata from this file.""" +preferred_citation,Citation,"A specific reference that the authors prefer to be cited, such as a paper describing the software. This guides users to the most appropriate citation." +references,List of Citations,"A list of relevant publications or other works related to the software. These could be papers that use, describe, or are built upon by the software." +repository,URL,"The URL of a public repository where a version of the software is archived, such as on Zenodo or Figshare. This points to a citable, preserved copy." +repository_artifact,URL,"The URL of a specific build or package of the software, such as a JAR file, container image, or wheel. This points to a runnable or installable version." +repository_code,URL,"The URL of the source code repository for the software. This is typically a link to a platform like GitHub, GitLab, or Bitbucket." +title,Text,The official name of the software being cited. This serves as the primary human-readable identifier for the work. +type,Text,"The type of the work being cited, which must be 'software'. This clarifies the nature of the cited entity." +url,URL,The URL of the software's project website or landing page. This provides a general entry point for information about the software. +version,Version,The version number of the software being cited. This should ideally follow a standard like Semantic Versioning. diff --git a/schema_cache/codemeta.csv b/schema_cache/codemeta.csv new file mode 100644 index 0000000..e973483 --- /dev/null +++ b/schema_cache/codemeta.csv @@ -0,0 +1,65 @@ +field,type,description +@context,Text,the JSON-LD context URI for CodeMeta v3 (always "https://w3id.org/codemeta/3.0") +@type,Text,the schema.org type of the resource (either "SoftwareSourceCode" or "SoftwareApplication") +@id,URL,a unique URI identifying the software +name,Text,the name of the software +codeRepository,URL,link to the repository where the un-compiled un-packaged source code and related code is available +programmingLanguage,schema:ComputerLanguage or Text or list[schema:ComputerLanguage or Text],the computer programming language +runtimePlatform,Text or list[Text],runtime platform or script interpreter dependencies +targetProduct,schema:SoftwareApplication or Text or list[schema:SoftwareApplication or Text],target operating system or product to which the code applies +applicationCategory,Text or URL or list[Text or URL],type of software application e.g. Game or Multimedia +applicationSubCategory,Text or URL or list[Text or URL],subcategory of the application e.g. Arcade Game +downloadUrl,URL or list[URL],link to downloadable binary +fileSize,Text,size of the application or package +installUrl,URL or list[URL],URL at which the app may be installed from +memoryRequirements,Text or URL or list[Text or URL],minimum memory requirements +operatingSystem,Text or list[Text],operating systems supported +permissions,Text or list[Text],permission(s) required by the application +processorRequirements,Text or list[Text],processor architecture required to run the application +releaseNotes,Text or URL or list[Text or URL],description of what changed in this version +softwareHelp,schema:CreativeWork or URL or list[schema:CreativeWork or URL],software application help +softwareRequirements,schema:SoftwareSourceCode or schema:SoftwareApplication or Text or URL or list[schema:SoftwareSourceCode or schema:SoftwareApplication or Text or URL],required software dependencies +softwareVersion,Text,version of the software instance +storageRequirements,Text or URL or list[Text or URL],storage requirements +supportingData,schema:DataFeed or list[schema:DataFeed],supporting data for a SoftwareApplication +author,schema:Role or schema:Person or schema:Organization or list[schema:Role or schema:Person or schema:Organization],the creator/author of this CreativeWork +citation,schema:CreativeWork or URL or list[schema:CreativeWork or URL],a citation or reference to another creative work +contributor,schema:Role or schema:Person or schema:Organization or list[schema:Role or schema:Person or schema:Organization],a secondary contributor to the CreativeWork +copyrightHolder,schema:Role or schema:Person or schema:Organization or list[schema:Role or schema:Person or schema:Organization],the party holding the legal copyright to the CreativeWork +copyrightYear,Integer or list[Integer],the year during which the claimed copyright was first asserted +dateCreated,Date or DateTime,the date on which the CreativeWork was created +dateModified,Date or DateTime,the date on which the CreativeWork was most recently modified +datePublished,Date or DateTime,date of first broadcast/publication +editor,schema:Person or list[schema:Person],specifies the person who edited the CreativeWork +encoding,schema:MediaObject or list[schema:MediaObject],a media object that encodes this CreativeWork +fileFormat,Text or URL or list[Text or URL],media type typically expressed using a MIME format +funder,schema:Role or schema:Person or schema:Organization or list[schema:Role or schema:Person or schema:Organization],a person or organization that supports a thing through a pledge or financial contribution +keywords,Text or list[Text],keywords or tags used to describe the content +license,schema:CreativeWork or URL or list[schema:CreativeWork or URL],a license document that applies to the content +producer,schema:Role or schema:Person or schema:Organization or list[schema:Role or schema:Person or schema:Organization],the person or organization who produced the work +provider,schema:Role or schema:Person or schema:Organization or list[schema:Role or schema:Person or schema:Organization],the service provider or administrator of the work +publisher,schema:Role or schema:Person or schema:Organization or Text or list[schema:Role or schema:Person or schema:Organization or Text],the publisher of the creative work +sponsor,schema:Role or schema:Person or schema:Organization or list[schema:Role or schema:Person or schema:Organization],a person or organization that supports a thing through a pledge or promise +version,Integer or Float or Text or list[Integer or Float or Text],the version of the CreativeWork +isAccessibleForFree,Boolean,a flag to signal that the item is accessible for free +isPartOf,schema:CreativeWork or URL or list[schema:CreativeWork or URL],indicates an item that this item is part of +hasPart,schema:CreativeWork or URL or list[schema:CreativeWork or URL],indicates an item that is part of this item +position,Integer or Text or list[Integer or Text],the position of an item in a series or sequence +identifier,schema:PropertyValue or Text or URL or list[schema:PropertyValue or Text or URL],unique identifier such as ISBN or UUID or DOI +description,Text,a description of the item +sameAs,URL or list[URL],URL of a reference web page that unambiguously indicates the item's identity +url,URL or list[URL],URL of the item +relatedLink,URL or list[URL],a link related to this object +review,schema:Review,a review of the item +hasSourceCode,schema:SoftwareSourceCode or schema:SoftwareApplication or Text or URL or list[schema:SoftwareSourceCode or schema:SoftwareApplication or Text or URL],link to the repository where the un-compiled un-packaged source code and related code is available +isSourceCodeOf,schema:SoftwareApplication or Text or URL or list[schema:SoftwareApplication or Text or URL],link to the compiled or packaged software application built from this source code +softwareSuggestions,schema:SoftwareSourceCode or schema:SoftwareApplication or Text or URL or list[schema:SoftwareSourceCode or schema:SoftwareApplication or Text or URL],optional dependencies +maintainer,schema:Role or schema:Person or schema:Organization or list[schema:Role or schema:Person or schema:Organization],individual responsible for maintaining the software +continuousIntegration,URL or list[URL],link to continuous integration service +buildInstructions,URL or list[URL],link to installation instructions or documentation +developmentStatus,Text,description of development status e.g. Active or Inactive or Suspended (see repostatus.org) +embargoEndDate,Date or DateTime,software may be embargoed from public access until a specified date +funding,Text or list[Text],information about financial support for development of the software +issueTracker,URL or list[URL],link to software bug tracking system +referencePublication,schema:ScholarlyArticle or Text or URL or list[schema:ScholarlyArticle or Text or URL],an academic publication related to the software +readme,URL or list[URL],link to software Readme file diff --git a/schema_cache/datacite.csv b/schema_cache/datacite.csv new file mode 100644 index 0000000..e95b1dc --- /dev/null +++ b/schema_cache/datacite.csv @@ -0,0 +1,39 @@ +Field,Obligation,Type,Sub-properties,Description,Examples +doi,Recommended,Text,N/A,"A Digital Object Identifier (DOI) is a character string used to uniquely identify a resource. A DOI name is divided into two parts, a prefix and a suffix, separated by a slash.",10.82433/b09z-4k37 +prefix,Recommended,Text,N/A,"The prefix part of the DOI, assigned by a registration agency.",10.82433 of DOI 10.82433/b09z-4k37 +suffix,Recommended,Text,N/A,"The suffix part of the DOI, chosen by the client to uniquely identify the resource.",b09z-4k37 of DOI 10.82433/b09z-4k37 +event,Optional,Enum,N/A,"The event state of the DOI,it determines the DOI's publication status.","'hide', 'registered', or 'publish'." +url,Optional,URL,N/A,The URL of the landing page for the resource that the DOI resolves to. This is a mandatory field for making a DOI findable.,https://example.com/ +types,Mandatory,Resource Type,"resourceType,resourceTypeGeneral",Information about the type of the resource. Usually a recommended free-text description paired with a general resource type from a controlled list.,"'resourceType': 'Census Data', 'resourceTypeGeneral': 'Dataset'" +creators,Mandatory,List of Persons,"nameType,givenName,familyName,nameIdentifier,affiliation","The main researchers or authors involved in producing the resource, in priority order.", +nameType,Recommended,Enum,N/A,Type of nasme of the creator.,'Organizational' or 'Personal'. +givenName,Recommended,Text,N/A,The personal or first name of the creator., +familyName,Recommended,Text,N/A,The surname or last name of the creator., +nameIdentifier,Recommended,List of Name Identifiers,"nameIdentifierScheme,schemeURI","Uniquely identifies an individual or legal entity, according to various schemes.","For an author with an @id sub-property: 'nameIdentifier': 'https://orcid.org/0000-0001-5727-2427', 'nameIdentifierScheme': 'ORCID', 'schemeURI': 'https://orcid.org/'" +affiliation,Recommended,List of Affiliations,"affiliationIdentifier,affiliationIdentifierScheme,schemeURI","The organizational or institutional affiliation of the creator. In the case of an organizational creator, it will often be the name of the institution to which that organization belongs to.","'affiliationIdentifier': 'https://ror.org/04wxnsj81', 'affiliationIdentifierScheme': 'ROR', 'schemeURI': 'https://ror.org'" +titles,Mandatory,List of Titles,"titleType,lang",The names or titles by which the resource is known. At least one main title is required.,"'lang': 'eng', 'title': 'Example', 'titleType': 'Subtitle'" +titleType,Optional,Enum,N/A,Type of title other than the main one.,"'AlternativeTitle','Subtitle','TranslatedTitle', or 'Other'." +publisher,Mandatory,Publisher,"publisherIdentifier,publisherIdentifierScheme,schemeUri,lang","The name of the entity that holds, archives, publishes, or otherwise distributes the resource.","'name': 'GFZ German Research Centre for Geosciences','publisherIdentifier': 'https://ror.org/04z8jg394','publisherIdentifierScheme': 'ROR','schemeUri': 'https://ror.org/','lang': 'en'" +publicationYear,Mandatory,Year,N/A,The year when the resource was or will be made publicly available. This must be a four-digit year., +subjects,Optional,List of Subjects,"subjectScheme,schemeUri,valueUri,classificationCode,lang","Subjects, keywords, classification codes, or key phrases describing the resource.", +subjectScheme,Optional,Text,N/A,The name of the subject scheme or classification code or authority if one is used.,ANZSRC Fields of Research +schemeUri,Optional,URI,N/A,The URI of the subject identifier scheme.,https://id.loc.gov/authorities/subjects.html +valueUri,Optional,URI,N/A,The URI of the subject term.,https://id.loc.gov/authorities/subjects/sh85118622.html +classificationCode,Optional,Text,N/A,Used for the subject term in the subject scheme.,310607 of subject term “Nanobiotechnology” in the ANZSRC Fields of Research. +contributors,Optional,List of Persons,contributorType,"Institutions or Persons responsible for collecting, managing, or otherwise contributing to the resource. Each contributor has the same sub-properties as a creator, but additionally has a contributor type.", +dates,Recommended,List of Dates,"dateType,dateInformation","Different dates relevant to the resource, such as creation, publication, or update dates. Each date entry must have a type indicating its meaning.","'date': '2020-01-01','dateType': 'Other','dateInformation': 'Conceptualized'" +dateType,Mandatory,Enum,N/A,The type of date., +language,Optional,Language,N/A,"The primary language of the resource, specified using an IETF BCP 47 language tag.", +alternateIdentifiers,Optional,List of Alternate Identifiers,alternateIdentifierType,"Any other identifiers for the resource, such as a local identifier or a URL to a code repository.","'alternateIdentifierType': 'Local accession number','alternateIdentifier': 'E-GEOD-3481'" +relatedIdentifiers,Recommended,List of Related Identifiers,"relatedIdentifierType,relationType","Identifiers of related resources, along with the nature of the relationship (e.g., 'IsPartOf', 'HasVersion', 'Cites').", +relationType,Mandatory,Enum,N/A,Description of the relationship of the resource being registered (A) and the related resource (B)., +relatedItems,Optional,List of Related Items,"relatedItemType,titles,relationType",Information about related resources that are not identified by a formal persistent identifier. This can include descriptive text about the related item., +sizes,Optional,List of Text,N/A,Unstructured size information about the resource.,"'15 pages','1 MB'" +formats,Recommended,List of Text,N/A,"Technical format of the resource, preferably using IANA media types.","'application/json', 'text/csv'" +version,Recommended,Version String,N/A,The version number of the resource. It is recommended to use semantic versioning where appropriate.,'version': '2.1' +rightsList,Optional,List of Rights Information,"rightsUri,rightsIdentifier,rightsIdentifierScheme,schemeUri,lang","Information about rights held in and over the resource, such as a license. It is recommended to use an SPDX license identifier and URI.","'rights': 'Creative Commons Attribution 4.0 International','rightsUri': 'https://creativecommons.org/licenses/by/4.0/','schemeUri': 'https://spdx.org/licenses/','rightsIdentifier': 'CC-BY-4.0','rightsIdentifierScheme': 'SPDX','lang': 'en'" +descriptions,Recommended,List of Descriptions,"descriptionType,lang",All additional information that does not fit in any of the other categories. May be used for technical information or detailed information associated with a scientific instrument.,"'lang': 'en','description': 'Example abstract','descriptionType': 'Abstract'" +geoLocations,Optional,List of Geographic Locations,"geoLocationPlace,geoLocationPoint,geoLocationBox,geoLocationPolygon","Spatial regions or named places where the data was collected or is about. Can be a point, a bounding box, or a polygon.", +fundingReferences,Optional,List of Funding References,"funderIdentifier,funderIdentifierType,awardNumber,awardUri,awardTitle","Information about financial support (funding) for the resource. This includes the funder name, award information, and funder identifier.", +schemaVersion,Optional,Schema URL,N/A,"The URI of the DataCite metadata schema version used. For this model, the value is fixed to the DataCite Kernel v4 schema URL.", +container,Optional,Container,"identifier,identifierType,type,title,firstPage","Information about the larger resource that contains this resource, such as a journal or a book series. This property helps create parent-child relationships.", \ No newline at end of file diff --git a/tests/data/codemeta/valid/artificial-anasazi.json b/tests/data/codemeta/valid/artificial-anasazi.json new file mode 100644 index 0000000..e253da5 --- /dev/null +++ b/tests/data/codemeta/valid/artificial-anasazi.json @@ -0,0 +1,73 @@ +{ + "@id": "https://doi.org/10.25937/krp4-g724", + "url": "https://doi.org/10.25937/krp4-g724", + "name": "Artificial Anasazi", + "@type": "SoftwareSourceCode", + "author": [ + { + "@id": "https://orcid.org/0000-0002-1240-9052", + "@type": "Person", + "email": "marco.janssen@asu.edu", + "givenName": "Marco", + "familyName": "Janssen", + "affiliation": { + "url": "https://schoolofsustainability.asu.edu/", + "name": "School of Sustainability", + "@type": "Organization" + } + }, + { + "@id": "https://orcid.org/0000-0002-1240-9052", + "@type": "Role", + "roleName": "pointOfContact" + } + ], + "license": { + "url": "http://www.gnu.org/licenses/gpl-2.0.html", + "name": "GPL-2.0", + "@type": "CreativeWork" + }, + "version": "1.1.0", + "@context": "https://w3id.org/codemeta/3.0", + "citation": [ + { + "text": "Axtell, Epstein, Dean, Gumerman, Swedlund, Harburger, Chakravarty, Hammond, Parker and Parker (2002) Population Growth and Collapse in a Multi-Agent Model of the Kayenta Anasazi in Long House Valley. PNAS 99(3): 7275-7279", + "@type": "CreativeWork" + } + ], + "keywords": [ + "archaeology", + "population dynamics", + "southwest", + "us" + ], + "publisher": { + "@id": "https://ror.org/015bsfc29", + "url": "https://www.comses.net", + "name": "CoMSES Net", + "@type": "Organization" + }, + "identifier": [ + "10.25937/krp4-g724", + "https://doi.org/10.25937/krp4-g724" + ], + "dateCreated": "2013-01-17", + "description": "Replication of the well known Artificial Anasazi model that simulates the population dynamics between 800 and 1350 in the Long House Valley in Arizona. See also Marco A. Janssen (2009) Understanding Artificial Anasazi, Journal of Artificial Societies and Social Simulation 12 (4) 13 http://jasss.soc.surrey.ac.uk", + "downloadUrl": "https://www.comses.net/codebases/2222/releases/1.1.0/download/", + "dateModified": "2018-10-18", + "releaseNotes": "", + "copyrightYear": 2013, + "datePublished": "2013-04-27", + "operatingSystem": "platform_independent", + "runtimePlatform": [ + "NetLogo" + ], + "applicationCategory": "Computational Model", + "programmingLanguage": [ + { + "name": "Logo", + "@type": "ComputerLanguage" + } + ], + "referencePublication": "Marco A. Janssen (2009) Understanding Artificial Anasazi, Journal of Artificial Societies and Social Simulation 12 (4) 13 http://jasss.soc.surrey.ac.uk" +} \ No newline at end of file diff --git a/tests/data/codemeta/valid/caltech.json b/tests/data/codemeta/valid/caltech.json new file mode 100644 index 0000000..2b84cb6 --- /dev/null +++ b/tests/data/codemeta/valid/caltech.json @@ -0,0 +1,97 @@ +{ + "@context": "https://doi.org/10.5063/schema/codemeta-2.0", + "@type": "SoftwareSourceCode", + "name": "InvenioRDM GitHub Archiver (IGA)", + "identifier": "10.22002/7vcz4-d4p68", + "description": "The InvenioRDM GitHub Archiver (IGA) automatically archives GitHub releases in an InvenioRDM repository.", + "version": "1.3.5", + "dateCreated": "2022-12-07", + "author": [ + { + "@type": "Person", + "givenName": "Michael", + "familyName": "Hucka", + "affiliation": { + "@id": "https://ror.org/05dxps055", + "@type": "Organization", + "name": "California Institute of Technology Library" + }, + "@id": 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2023, + "license": "https://github.com/caltechlibrary/iga/blob/main/LICENSE", + "isAccessibleForFree": true, + "url": "https://caltechlibrary.github.io/iga", + "codeRepository": "https://github.com/caltechlibrary/iga", + "readme": "https://github.com/caltechlibrary/iga/blob/main/README.md", + "releaseNotes": "https://github.com/caltechlibrary/iga/blob/main/CHANGES.md", + "issueTracker": "https://github.com/caltechlibrary/iga/issues", + "downloadUrl": "https://github.com/caltechlibrary/iga/releases", + "softwareHelp": "https://caltechlibrary.github.io/iga", + "relatedLink": "https://data.caltech.edu/records/x9vay-n4x27", + "programmingLanguage": { + "@type": "ComputerLanguage", + "name": "Python", + "version": "3.9", + "url": "https://www.python.org/" + }, + "keywords": [ + "software", + "science", + "archiving", + "archives", + "preservation", + "source code", + "source code archiving", + "source code preservation", + "code preservation", + "automation", + "reproducibility", + 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"version": "v2.8.3", "license": "https://opensource.org/licenses/BSD-3-Clause", "description": "

New features

\n\n

Bug-fixes and performance

\n\n

Other

\n\n

New Contributors

\n\n

Full Changelog: https://github.com/scikit-hep/awkward/compare/v2.8.2...v2.8.3

", "url": "https://zenodo.org/records/15428136", "codeRepository": "https://github.com/scikit-hep/awkward"} \ No newline at end of file diff --git a/tests_llm/__init__.py b/tests_llm/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests_llm/conftest.py b/tests_llm/conftest.py new file mode 100644 index 0000000..865f87c --- /dev/null +++ b/tests_llm/conftest.py @@ -0,0 +1,31 @@ +import json +import pytest +from pathlib import Path +from dotenv import load_dotenv + +load_dotenv() + +LOGS_DIR = Path(__file__).parent / "logs" + + +@pytest.fixture +def run_log(llm_model): + results = [] + yield results + + LOGS_DIR.mkdir(exist_ok=True) + model_name = llm_model.replace("/", "-") + json_path = LOGS_DIR / f"{model_name}.json" + + existing = json.loads(json_path.read_text()) if json_path.exists() else [] + existing.extend(results) + json_path.write_text(json.dumps(existing, indent=2)) + + +def discover_test_files(test_data_dir: Path, model_name: str, specifier: str): + folder = test_data_dir / model_name / specifier + file_patterns = ["*.json", "*.yml", "*.yaml", "*.cff"] + files = [] + for pattern in file_patterns: + files.extend(folder.glob(pattern)) + return files diff --git a/tests_llm/logs/openrouter-anthropic-claude-haiku-4-5.json b/tests_llm/logs/openrouter-anthropic-claude-haiku-4-5.json new file mode 100644 index 0000000..476c685 --- /dev/null +++ b/tests_llm/logs/openrouter-anthropic-claude-haiku-4-5.json @@ -0,0 +1,78 @@ +[ + { + "timestamp": "2026-04-14 13:13:11", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 3.88, + "prompt_tokens": 5432, + "completion_tokens": 341, + "passed": false, + "codemeta:authors": { + "target": "cff:authors", + "violations": [ + { + "title": "Missing field 'authors[0].email'", + "expected": "cboettig@gmail.com", + "llm_output": "(missing)" + } + ] + }, + "codemeta:identifiers": { + "target": "cff:identifiers", + "violations": [ + { + "title": "Missing field 'identifiers'", + "expected": "[{'type': 'other', 'value': 'codemetar'}]", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 13:13:16", + "file": "creator.json", + "source:target": "codemeta:cff", + "runtime_sec": 5.2, + "prompt_tokens": 8549, + "completion_tokens": 402, + "passed": true + }, + { + "timestamp": "2026-04-14 13:13:24", + "file": "context.json", + "source:target": "codemeta:cff", + "runtime_sec": 7.57, + "prompt_tokens": 8552, + "completion_tokens": 404, + "passed": true + }, + { + "timestamp": "2026-04-14 13:13:43", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 18.71, + "prompt_tokens": 13181, + "completion_tokens": 2640, + "passed": false, + "codemeta:creators": { + "target": "datacite:creators", + "violations": [ + { + "title": "Missing field 'creators[0].nameIdentifiers[0].schemeUri'", + "expected": "https://orcid.org/", + "llm_output": "(missing)" + } + ] + }, + "codemeta:formats": { + "target": "datacite:formats", + "violations": [ + { + "title": "Value at 'formats[0]' doesn't match", + "expected": "'Logo'", + "llm_output": "[]" + } + ] + } + } +] \ No newline at end of file diff --git a/tests_llm/logs/openrouter-anthropic-claude-sonnet-4-6.json b/tests_llm/logs/openrouter-anthropic-claude-sonnet-4-6.json new file mode 100644 index 0000000..9b9d9a5 --- /dev/null +++ b/tests_llm/logs/openrouter-anthropic-claude-sonnet-4-6.json @@ -0,0 +1,208 @@ +[ + { + "timestamp": "2026-04-14 12:55:42", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 5.91, + "prompt_tokens": 5432, + "completion_tokens": 356, + "passed": false, + "codemeta:identifiers": { + "target": "cff:identifiers", + "violations": [ + { + "title": "Missing field 'identifiers'", + "expected": "[{'type': 'other', 'value': 'codemetar'}]", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 12:55:44", + "file": "creator.json", + "source:target": "codemeta:cff", + "runtime_sec": 1.98, + "prompt_tokens": 4086, + "completion_tokens": 81, + "passed": false, + "codemeta:type": { + "target": "cff:type", + "violations": [ + { + "title": "Missing field 'type'", + "expected": "software", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 12:55:47", + "file": "context.json", + "source:target": "codemeta:cff", + "runtime_sec": 2.65, + "prompt_tokens": 4087, + "completion_tokens": 90, + "passed": true + }, + { + "timestamp": "2026-04-14 12:56:34", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 47.26, + "prompt_tokens": 13688, + "completion_tokens": 3695, + "passed": false, + "codemeta:formats": { + "target": "datacite:formats", + "violations": [ + { + "title": "Value at 'formats[0]' doesn't match", + "expected": "'Logo'", + "llm_output": "[]" + } + ] + } + }, + { + "timestamp": "2026-04-14 13:07:53", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 7.28, + "prompt_tokens": 5432, + "completion_tokens": 356, + "passed": false, + "codemeta:identifiers": { + "target": "cff:identifiers", + "violations": [ + { + "title": "Missing field 'identifiers'", + "expected": "[{'type': 'other', 'value': 'codemetar'}]", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 13:07:57", + "file": "creator.json", + "source:target": "codemeta:cff", + "runtime_sec": 3.65, + "prompt_tokens": 4086, + "completion_tokens": 81, + "passed": false, + "codemeta:type": { + "target": "cff:type", + "violations": [ + { + "title": "Missing field 'type'", + "expected": "software", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 13:07:59", + "file": "context.json", + "source:target": "codemeta:cff", + "runtime_sec": 2.34, + "prompt_tokens": 4087, + "completion_tokens": 90, + "passed": true + }, + { + "timestamp": "2026-04-14 13:08:38", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 38.47, + "prompt_tokens": 13547, + "completion_tokens": 3413, + "passed": false, + "codemeta:formats": { + "target": "datacite:formats", + "violations": [ + { + "title": "Value at 'formats[0]' doesn't match", + "expected": "'Logo'", + "llm_output": "[]" + } + ] + } + }, + { + "timestamp": "2026-05-12 12:54:38", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 6.57, + "prompt_tokens": 7937, + "completion_tokens": 322, + "passed": true + }, + { + "timestamp": "2026-05-12 12:54:48", + "file": "artificial-anasazi.json", + "source:target": "codemeta:datacite", + "runtime_sec": 9.52, + "prompt_tokens": 10787, + "completion_tokens": 872, + "passed": false, + "codemeta:prefix": { + "target": "datacite:prefix", + "violations": [ + { + "desc": "Missing field 'prefix'", + "expected": "10.25937", + "llm_output": "(missing)" + } + ] + }, + "codemeta:suffix": { + "target": "datacite:suffix", + "violations": [ + { + "desc": "Missing field 'suffix'", + "expected": "krp4-g724", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-05-12 12:55:01", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 12.81, + "prompt_tokens": 11538, + "completion_tokens": 1132, + "passed": true + }, + { + "timestamp": "2026-05-12 12:57:42", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 4.86, + "prompt_tokens": 7937, + "completion_tokens": 322, + "passed": true + }, + { + "timestamp": "2026-05-12 12:57:53", + "file": "artificial-anasazi.json", + "source:target": "codemeta:datacite", + "runtime_sec": 10.63, + "prompt_tokens": 10789, + "completion_tokens": 945, + "passed": true + }, + { + "timestamp": "2026-05-12 12:58:05", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 12.22, + "prompt_tokens": 11540, + "completion_tokens": 1132, + "passed": true + } +] \ No newline at end of file diff --git a/tests_llm/logs/openrouter-deepseek-deepseek-chat.json b/tests_llm/logs/openrouter-deepseek-deepseek-chat.json new file mode 100644 index 0000000..5f7505a --- /dev/null +++ b/tests_llm/logs/openrouter-deepseek-deepseek-chat.json @@ -0,0 +1,88 @@ +[ + { + "timestamp": "2026-04-14 13:10:30", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 38.0, + "prompt_tokens": 10236, + "completion_tokens": 630, + "passed": false, + "codemeta:authors": { + "target": "cff:authors", + "violations": [ + { + "title": "Missing field 'authors[0].email'", + "expected": "cboettig@gmail.com", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'authors[0].family-names'", + "expected": "Boettiger", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'authors[0].given-names'", + "expected": "Carl", + "llm_output": "(missing)" + } + ] + }, + "codemeta:identifiers": { + "target": "cff:identifiers", + "violations": [ + { + "title": "Missing field 'identifiers'", + "expected": "[{'type': 'other', 'value': 'codemetar'}]", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 13:10:37", + "file": "creator.json", + "source:target": "codemeta:cff", + "runtime_sec": 7.4, + "prompt_tokens": 3476, + "completion_tokens": 71, + "passed": true + }, + { + "timestamp": "2026-04-14 13:10:42", + "file": "context.json", + "source:target": "codemeta:cff", + "runtime_sec": 5.14, + "prompt_tokens": 7123, + "completion_tokens": 130, + "passed": true + }, + { + "timestamp": "2026-04-14 13:13:07", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 144.78, + "prompt_tokens": 19238, + "completion_tokens": 2907, + "passed": false, + "codemeta:creators": { + "target": "datacite:creators", + "violations": [ + { + "title": "Missing field 'creators[0].nameIdentifiers[0].schemeUri'", + "expected": "https://orcid.org/", + "llm_output": "(missing)" + } + ] + }, + "codemeta:formats": { + "target": "datacite:formats", + "violations": [ + { + "title": "Value at 'formats[0]' doesn't match", + "expected": "'Logo'", + "llm_output": "[]" + } + ] + } + } +] \ No newline at end of file diff --git a/tests_llm/logs/openrouter-google-gemini-2.5-pro.json b/tests_llm/logs/openrouter-google-gemini-2.5-pro.json new file mode 100644 index 0000000..0a26f4e --- /dev/null +++ b/tests_llm/logs/openrouter-google-gemini-2.5-pro.json @@ -0,0 +1,430 @@ +[ + { + "timestamp": "2026-04-14 12:53:11", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 38.52, + "prompt_tokens": 5088, + "completion_tokens": 4307, + "passed": true + }, + { + "timestamp": "2026-04-14 12:53:28", + "file": "creator.json", + "source:target": "codemeta:cff", + "runtime_sec": 17.35, + "prompt_tokens": 3850, + "completion_tokens": 1849, + "passed": true + }, + { + "timestamp": "2026-04-14 12:53:42", + "file": "context.json", + "source:target": "codemeta:cff", + "runtime_sec": 13.75, + "prompt_tokens": 3850, + "completion_tokens": 1401, + "passed": true + }, + { + "timestamp": "2026-04-14 12:55:13", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 90.43, + "prompt_tokens": 12922, + "completion_tokens": 11197, + "passed": false, + "codemeta:creators": { + "target": "datacite:creators", + "violations": [ + { + "title": "Missing field 'creators[0].nameType'", + "expected": "Personal", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'creators[0].nameIdentifiers[0].schemeUri'", + "expected": "https://orcid.org/", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'creators[1].nameType'", + "expected": "Personal", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'creators[2].nameType'", + "expected": "Personal", + "llm_output": "(missing)" + } + ] + }, + "codemeta:formats": { + "target": "datacite:formats", + "violations": [ + { + "title": "Missing field 'formats'", + "expected": "['Logo']", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 13:04:47", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 38.62, + "prompt_tokens": 5088, + "completion_tokens": 4744, + "passed": true + }, + { + "timestamp": "2026-04-14 13:05:17", + "file": "creator.json", + "source:target": "codemeta:cff", + "runtime_sec": 29.92, + "prompt_tokens": 8102, + "completion_tokens": 2967, + "passed": true + }, + { + "timestamp": "2026-04-14 13:06:10", + "file": "context.json", + "source:target": "codemeta:cff", + "runtime_sec": 53.33, + "prompt_tokens": 8104, + "completion_tokens": 4267, + "passed": true + }, + { + "timestamp": "2026-04-14 13:07:23", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 72.22, + "prompt_tokens": 12774, + "completion_tokens": 8866, + "passed": false, + "codemeta:creators": { + "target": "datacite:creators", + "violations": [ + { + "title": "Missing field 'creators[0].nameType'", + "expected": "Personal", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'creators[0].nameIdentifiers[0].schemeUri'", + "expected": "https://orcid.org/", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'creators[1].nameType'", + "expected": "Personal", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'creators[2].nameType'", + "expected": "Personal", + "llm_output": "(missing)" + } + ] + }, + "codemeta:formats": { + "target": "datacite:formats", + "violations": [ + { + "title": "Missing field 'formats'", + "expected": "['Logo']", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-05-12 12:20:07", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 37.97, + "prompt_tokens": 5854, + "completion_tokens": 4105, + "passed": true + }, + { + "timestamp": "2026-05-12 12:21:34", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 86.54, + "prompt_tokens": 18399, + "completion_tokens": 10375, + "passed": false, + "codemeta:creators": { + "target": "datacite:creators", + "violations": [ + { + "desc": "Missing field 'creators[0].nameIdentifiers[0].schemeUri'", + "expected": "https://orcid.org/", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-05-12 12:24:28", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 41.02, + "prompt_tokens": 12853, + "completion_tokens": 4917, + "passed": true + }, + { + "timestamp": "2026-05-12 12:25:29", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 60.19, + "prompt_tokens": 18577, + "completion_tokens": 8212, + "passed": true + }, + { + "timestamp": "2026-05-12 12:36:04", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 47.67, + "prompt_tokens": 5854, + "completion_tokens": 5412, + "passed": true + }, + { + "timestamp": "2026-05-12 12:36:43", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 38.43, + "prompt_tokens": 8506, + "completion_tokens": 4659, + "passed": true + }, + { + "timestamp": "2026-05-12 12:47:14", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 21.92, + "prompt_tokens": 7483, + "completion_tokens": 2520, + "passed": true + }, + { + "timestamp": "2026-05-12 12:47:52", + "file": "artificial-anasazi.json", + "source:target": "codemeta:datacite", + "runtime_sec": 37.66, + "prompt_tokens": 10290, + "completion_tokens": 4456, + "passed": false, + "codemeta:doi": { + "target": "datacite:doi", + "violations": [ + { + "desc": "Missing field 'doi'", + "expected": "10.25937/krp4-g724", + "llm_output": "(missing)" + } + ] + }, + "codemeta:prefix": { + "target": "datacite:prefix", + "violations": [ + { + "desc": "Missing field 'prefix'", + "expected": "10.25937", + "llm_output": "(missing)" + } + ] + }, + "codemeta:suffix": { + "target": "datacite:suffix", + "violations": [ + { + "desc": "Missing field 'suffix'", + "expected": "krp4-g724", + "llm_output": "(missing)" + } + ] + }, + "codemeta:creators": { + "target": "datacite:creators", + "violations": [ + { + "desc": "Missing field 'creators[0].affiliation[0].affiliationIdentifier'", + "expected": "https://schoolofsustainability.asu.edu/", + "llm_output": "(missing)" + } + ] + }, + "codemeta:publisher": { + "target": "datacite:publisher", + "violations": [ + { + "desc": "Missing field 'publisher.publisherIdentifier'", + "expected": "https://ror.org/015bsfc29", + "llm_output": "(missing)" + }, + { + "desc": "Missing field 'publisher.publisherIdentifierScheme'", + "expected": "ROR", + "llm_output": "(missing)" + }, + { + "desc": "Missing field 'publisher.schemeUri'", + "expected": "https://ror.org/", + "llm_output": "(missing)" + } + ] + }, + "codemeta:rightsList": { + "target": "datacite:rightsList", + "violations": [ + { + "desc": "Missing field 'rightsList[0].rights'", + "expected": "GPL-2.0", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-05-12 12:48:22", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 29.69, + "prompt_tokens": 11067, + "completion_tokens": 4377, + "passed": true + }, + { + "timestamp": "2026-05-12 12:53:13", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 16.68, + "prompt_tokens": 7479, + "completion_tokens": 2066, + "passed": true + }, + { + "timestamp": "2026-05-12 12:53:47", + "file": "artificial-anasazi.json", + "source:target": "codemeta:datacite", + "runtime_sec": 34.13, + "prompt_tokens": 10286, + "completion_tokens": 4171, + "passed": false, + "codemeta:prefix": { + "target": "datacite:prefix", + "violations": [ + { + "desc": "Missing field 'prefix'", + "expected": "10.25937", + "llm_output": "(missing)" + } + ] + }, + "codemeta:suffix": { + "target": "datacite:suffix", + "violations": [ + { + "desc": "Missing field 'suffix'", + "expected": "krp4-g724", + "llm_output": "(missing)" + } + ] + }, + "codemeta:creators": { + "target": "datacite:creators", + "violations": [ + { + "desc": "Missing field 'creators[0].affiliation[0].affiliationIdentifier'", + "expected": "https://schoolofsustainability.asu.edu/", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-05-12 12:56:27", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 18.45, + "prompt_tokens": 7479, + "completion_tokens": 2111, + "passed": true + }, + { + "timestamp": "2026-05-12 12:56:53", + "file": "artificial-anasazi.json", + "source:target": "codemeta:datacite", + "runtime_sec": 26.3, + "prompt_tokens": 10286, + "completion_tokens": 3303, + "passed": false, + "codemeta:prefix": { + "target": "datacite:prefix", + "violations": [ + { + "desc": "Missing field 'prefix'", + "expected": "10.25937", + "llm_output": "(missing)" + } + ] + }, + "codemeta:suffix": { + "target": "datacite:suffix", + "violations": [ + { + "desc": "Missing field 'suffix'", + "expected": "krp4-g724", + "llm_output": "(missing)" + } + ] + }, + "codemeta:creators": { + "target": "datacite:creators", + "violations": [ + { + "desc": "Missing field 'creators[0].affiliation[0].affiliationIdentifier'", + "expected": "https://schoolofsustainability.asu.edu/", + "llm_output": "(missing)" + } + ] + }, + "codemeta:publisher": { + "target": "datacite:publisher", + "violations": [ + { + "desc": "Missing field 'publisher.publisherIdentifier'", + "expected": "https://ror.org/015bsfc29", + "llm_output": "(missing)" + }, + { + "desc": "Missing field 'publisher.publisherIdentifierScheme'", + "expected": "ROR", + "llm_output": "(missing)" + }, + { + "desc": "Missing field 'publisher.schemeUri'", + "expected": "https://ror.org/", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-05-12 12:57:22", + "file": "chime.json", + "source:target": "codemeta:datacite", + "runtime_sec": 27.94, + "prompt_tokens": 11063, + "completion_tokens": 3925, + "passed": true + } +] \ No newline at end of file diff --git a/tests_llm/logs/openrouter-mistralai-mistral-large.json b/tests_llm/logs/openrouter-mistralai-mistral-large.json new file mode 100644 index 0000000..c16ca8b --- /dev/null +++ b/tests_llm/logs/openrouter-mistralai-mistral-large.json @@ -0,0 +1,307 @@ +[ + { + "timestamp": "2026-04-14 12:56:56", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 21.59, + "prompt_tokens": 17681, + "completion_tokens": 1293, + "passed": false, + "codemeta:authors": { + "target": "cff:authors", + "violations": [ + { + "title": "Missing field 'authors[0].email'", + "expected": "cboettig@gmail.com", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'authors[0].family-names'", + "expected": "Boettiger", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'authors[0].given-names'", + "expected": "Carl", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 12:57:07", + "file": "creator.json", + "source:target": "codemeta:cff", + "runtime_sec": 11.44, + "prompt_tokens": 13345, + "completion_tokens": 768, + "passed": true + }, + { + "timestamp": "2026-04-14 13:08:57", + "file": "codemetar.json", + "source:target": "codemeta:cff", + "runtime_sec": 18.64, + "prompt_tokens": 17696, + "completion_tokens": 1302, + "passed": false, + "codemeta:authors": { + "target": "cff:authors", + "violations": [ + { + "title": "Missing field 'authors[0].email'", + "expected": "cboettig@gmail.com", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'authors[0].family-names'", + "expected": "Boettiger", + "llm_output": "(missing)" + }, + { + "title": "Missing field 'authors[0].given-names'", + "expected": "Carl", + "llm_output": "(missing)" + } + ] + } + }, + { + "timestamp": "2026-04-14 13:09:08", + "file": "creator.json", + "source:target": "codemeta:cff", + "runtime_sec": 11.62, + "prompt_tokens": 13001, + "completion_tokens": 748, + "passed": true + }, + { + "timestamp": "2026-04-14 13:09:20", + "file": "context.json", + "source:target": "codemeta:cff", + 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files automatically for R packages.", + "name": "codemetar: Generate CodeMeta Metadata for R Packages", + "codeRepository": "https://github.com/codemeta/codemetar", + "issueTracker": "https://github.com/codemeta/codemetar/issues", + "license": "https://spdx.org/licenses/MIT", + "version": "0.1.0", + "programmingLanguage": { + "@type": "ComputerLanguage", + "name": "R", + "version": "3.4.0", + "url": "https://r-project.org" + }, + "runtimePlatform": "R version 3.4.0 (2017-04-21)", + "author": [ + { + "@type": "Person", + "givenName": "Carl", + "familyName": "Boettiger", + "email": "cboettig@gmail.com", + "@id": "http://orcid.org/0000-0002-1642-628X" + } + ], + "copyrightHolder": [ + { + "@type": "Person", + "givenName": "Carl", + "familyName": "Boettiger", + "email": "cboettig@gmail.com", + "@id": "http://orcid.org/0000-0002-1642-628X" + } + ], + "maintainer": { + "@type": "Person", + "givenName": "Carl", + "familyName": "Boettiger", + "email": "cboettig@gmail.com", + "@id": "http://orcid.org/0000-0002-1642-628X" + }, + "softwareSuggestions": [ + { + "@type": "SoftwareApplication", + "name": "testthat", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "jsonvalidate", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "jsonld", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "covr", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "knitr", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "rmarkdown", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "httr", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "magrittr", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "readr", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "xml2", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + } + ], + "softwareRequirements": [ + { + "@type": "SoftwareApplication", + "name": "jsonlite", + "version": "1.3", + "provider": { + "@id": "https://cran.r-project.org", + "@type": "Organization", + "name": "Central R Archive Network (CRAN)", + "url": "https://cran.r-project.org" + } + }, + { + "@type": "SoftwareApplication", + "name": "utils" + }, + { + "@type": "SoftwareApplication", + "name": "methods" + }, + { + "@type": "SoftwareApplication", + "name": "stats" + }, + { + "@type": "SoftwareApplication", + "name": "R", + "version": "3.0.0" + } + ], + "continuousIntegration": 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--git a/tests_llm/test_llm.py b/tests_llm/test_llm.py new file mode 100644 index 0000000..9f41c85 --- /dev/null +++ b/tests_llm/test_llm.py @@ -0,0 +1,212 @@ +import json +import re +import time +from pathlib import Path +from datetime import datetime + +from .conftest import discover_test_files +from codemeticulous.convert import convert +from codemeticulous.ai_convert import convert_ai + +# NOTE: testing is configured to only evaluate conversion from codemeta to compare against logical conversion +TEST_DATA_DIR = Path(__file__).parent.parent / "tests" / "data" + +CONVERSION_MAP = { + "codemeta": { + "cff": [ # cff requires authors + "codemetar.json", + # "context.json", + # "creator.json", + # "chime.json" + ], + "datacite": [ # datacite metadata requires creators, title, publisher, publication year + "chime.json", + "artificial-anasazi.json", + # "invenordm.json" + ], + } +} + +PROVIDER_CONFIG = { + "openrouter_llm": { + "prefix": "openrouter/", + "models": [ + # Advanced + "google/gemini-2.5-pro", + "openai/gpt-4o", + "anthropic/claude-sonnet-4-6", + "mistralai/mistral-large", + # "deepseek/deepseek-chat", + # Mid-tier + # "google/gemini-2.0-flash-001", + # "openai/gpt-4o-mini", + # "qwen/qwen-2.5-72b-instruct", + # "meta-llama/llama-3.3-70b-instruct", + # Lightweight + # "anthropic/claude-haiku-4-5", + ] + }, +} + + +def pytest_generate_tests(metafunc): + if "llm_model" in metafunc.fixturenames: + models = [ + provider["prefix"] + model + for provider in PROVIDER_CONFIG.values() + for model in provider["models"] + ] + metafunc.parametrize("llm_model", models, ids=models) + + if "test_case" in metafunc.fixturenames: + test_cases = [] + test_ids = [] + + for source_format, target_maps in CONVERSION_MAP.items(): # just codemeta -> other formats + input_files = [] + for subdir in ["valid", "clean"]: + input_files.extend(discover_test_files(TEST_DATA_DIR, source_format, subdir)) + for target_name, convertible_files in target_maps.items(): + for file_path in input_files: + if file_path.name in convertible_files: + test_cases.append((source_format, target_name, file_path)) + test_ids.append(f"convert {source_format} -> {target_name} ({file_path.name})") + + metafunc.parametrize("test_case", test_cases, ids=test_ids) + + +def fields_are_superset(baseline: dict, ai_result: dict, path: str = "") -> list[dict]: + diffs = [] + + for key, baseline_val in baseline.items(): + full_path = f"{path}.{key}" if path else key + + # 1st check to see if any fields in logical conversion isn't in the llm's conversion + if key not in ai_result: + diffs.append({ + "description": f"Missing field '{full_path}'", + "logical": str(baseline_val), + "llm": "(missing)", + }) + continue + + ai_val = ai_result[key] + + if isinstance(baseline_val, dict) and isinstance(ai_val, dict): + diffs.extend(fields_are_superset(baseline_val, ai_val, full_path)) + elif isinstance(baseline_val, list) and isinstance(ai_val, list): + for i, b_item in enumerate(baseline_val): + item_path = f"{full_path}[{i}]" + if isinstance(b_item, dict): + matched = any( + not fields_are_superset(b_item, a_item) # ignores priority in lists for certain fields + for a_item in ai_val + if isinstance(a_item, dict) + ) + if not matched: + ai_dicts = [a for a in ai_val if isinstance(a, dict)] + if ai_dicts: + closest = min(ai_dicts, key=lambda a: len(fields_are_superset(b_item, a))) + sub_diffs = fields_are_superset(b_item, closest, item_path) + diffs.extend(sub_diffs) + else: + diffs.append({ + "description": f"No dict items in LLM result for '{item_path}'", + "logical": str(b_item), + "llm": str(ai_val), + }) + else: # deals with all other types other than dicts + if b_item not in ai_val: + diffs.append({ + "description": f"Value at '{item_path}' doesn't match", + "logical": repr(b_item), + "llm": repr(ai_val), + }) + return diffs + + +def test_ai_convert(test_case, llm_model, run_log): + source_format, target_format, file_path = test_case + + print(f"\n{llm_model} conversion from {source_format} to {target_format} with {file_path}") + + with open(file_path, "r") as f: + source_data = json.load(f) + + baseline = convert(source_format, target_format, source_data) + + # track runtime per ai conversion + start = time.time() + llm_result, usage = convert_ai(llm_model, source_format, target_format, source_data) # note that if llm times out after 3 attempts, it won't be logged + elapsed = round(time.time() - start, 2) + + assert llm_result is not None, "LLM conversion returned None" + + baseline_dict = baseline.dict(serialize=True) + ai_dict = llm_result.dict(serialize=True) + + violations = fields_are_superset(baseline_dict, ai_dict) + + # grouping violations by top-level field name from the description + violations_by_field: dict[str, list] = {} + for v in violations: + m = re.search(r"'([^']+)'", v["description"]) + top_field = re.split(r"[.\[]", m.group(1))[0] if m else "unknown" + violations_by_field.setdefault(top_field, []).append(v) + + entry = { + "timestamp": datetime.now().strftime("%Y-%m-%d %H:%M:%S"), + "file": file_path.name, + "source:target": f"{source_format}:{target_format}", + "runtime_sec": elapsed, + # "cost": usage["cost"], + "prompt_tokens": usage["prompt_tokens"], + "completion_tokens": usage["completion_tokens"], + "passed": len(violations) == 0, + } + + # logs only top level fields that have differences from logical conversion + for field, baseline_val in baseline_dict.items(): + field_violations = violations_by_field.get(field, []) + if not field_violations: + continue + entry[f"{source_format}:{field}"] = { + "target": f"{target_format}:{field}", + "violations": [ + { + "desc": v["description"], + "expected": v["logical"], + "llm_output": v["llm"], + } + for v in field_violations + ], + } + + run_log.append(entry) + + # add full llm outputs that passed into a seperate log dump + if len(violations) == 0: + path = Path(__file__).parent / "logs" / "passed_cases.json" + raw = path.read_text() if path.exists() else 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