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Update ci scripts
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.github/workflows/non_omv.yml

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steps:
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- uses: actions/checkout@v2
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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- name: Install OMV
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run: |
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pip install git+https://github.com/OpenSourceBrain/osb-model-validation
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- name: Install OSB API
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run: |
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git clone https://github.com/OpenSourceBrain/OSB_API.git
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cd OSB_API/python
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python setup.py install
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- name: Test Channelpedia related scripts
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run: |
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cd Channelpedia
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pip install pyneuroml
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python ChannelpediaToNeuroML2.py HCN1
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python analyse.py
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pip install pyneuroml
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pynml LEMS_Test_HCN1.xml -nogui
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- name: Test NMC related scripts
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run: |
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omv install NEURON
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omv install NEURON
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pip install jinja2
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cd NMC/parser
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cd NMC/parser
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nrnivmodl ../NEURON/ # compile mod files for use here; nrnivmodl installed with Neuron via pip
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python ParseAll.py
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omv list -V

.github/workflows/omv-ci.yml

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fail-fast: false
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matrix:
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python-version: [ 3.7, 3.9 ]
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engine: [ "NEURON:7.7", NEURON, jNeuroML, jNeuroML_NEURON, jNeuroML_NetPyNE, jNeuroML_validate ]
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engine: [ NEURON, jNeuroML, jNeuroML_NEURON, jNeuroML_NetPyNE, jNeuroML_validate ]
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v2
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install OMV
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run: |
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pip install git+https://github.com/OpenSourceBrain/osb-model-validation
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pip install scipy sympy matplotlib cython pandas tables
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- name: Run OMV tests on engine ${{ matrix.engine }}
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run: |
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omv all -V --engine=${{ matrix.engine }}
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- name: OMV final version info
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run: |
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omv list -V # list installed engines

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