Merge pull request #430 from vincent-noel/fix/heberlr/pr-neighbor-list-for-non-movable-cells

Fix/heberlr/pr neighbor list for non movable cells

Author: vincent-noel

.github/workflows/tests.yml

@@ -25,7 +25,7 @@ jobs:
           {project: "physiboss-tutorial", name: "PhysiBoSS Tutorial", binary: "project", config: "config/cell_cycle/PhysiCell_settings.xml", max_time: 300, output_folder: "output"},
           {project: "worm-sample", name: "PhysiCell worm", binary: "worm", config: "config/PhysiCell_settings.xml", max_time: 120, output_folder: "output"},
           {project: "virus-macrophage-sample", name: "Virus Macrophage", binary: "virus-sample", config: "config/PhysiCell_settings.xml", max_time: 120, output_folder: "output"},
-          {project: "mechano-sample", name: "PhysiCell Mechano", binary: "project", config: "config/PhysiCell_settings.xml", max_time: 120, output_folder: "output"},
+          {project: "mechano-sample", name: "PhysiCell Mechano", binary: "project", config: "config/PhysiCell_settings.xml", max_time: 120, output_folder: ""},
           {project: "cancer-biorobots-sample", name: "PhysiCell Cancer Biorobots", binary: "cancer_biorobots", config: "config/PhysiCell_settings.xml", max_time: 120, output_folder: ""},
           {project: "biorobots-sample", name: "PhysiCell Biorobots", binary: "biorobots", config: "config/PhysiCell_settings.xml", max_time: 120, output_folder: ""},
           {project: "celltypes3-sample", name: "PhysiCell Celltypes3", binary: "celltypes3", config: "config/PhysiCell_settings.xml", max_time: 120, output_folder: ""},

.github/workflows/tests_cmake.yml

@@ -24,7 +24,7 @@ jobs:
           {"use_physiboss": true, cwd: "build/sample_projects_intracellular/boolean/tutorial", name: "PhysiBoSS Tutorial", binary: "tutorial", config: "config/cell_cycle/PhysiCell_settings.xml", max_time: 300, validation_output_folder: "output_physiboss-tutorial"},
           {"use_physiboss": false, cwd: "build/sample_projects/worm", name: "PhysiCell worm", binary: "worm", config: "config/PhysiCell_settings.xml", max_time: 120, validation_output_folder: "output_worm-sample"},
           {"use_physiboss": false, cwd: "build/sample_projects/virus_macrophage", name: "Virus Macrophage", binary: "virus_macrophage", config: "config/PhysiCell_settings.xml", max_time: 120, validation_output_folder: "output_virus-macrophage-sample"},
-          {"use_physiboss": false, cwd: "build/sample_projects/mechano", name: "PhysiCell Mechano", binary: "mechano", config: "config/PhysiCell_settings.xml", max_time: 120, validation_output_folder: "output_mechano-sample"},
+          {"use_physiboss": false, cwd: "build/sample_projects/mechano", name: "PhysiCell Mechano", binary: "mechano", config: "config/PhysiCell_settings.xml", max_time: 120, validation_output_folder: ""},
           {"use_physiboss": false, cwd: "build/sample_projects/cancer_biorobots", name: "PhysiCell Cancer Biorobots", binary: "cancer_biorobots", config: "config/PhysiCell_settings.xml", max_time: 120, validation_output_folder: ""},
           {"use_physiboss": false, cwd: "build/sample_projects/biorobots", name: "PhysiCell Biorobots", binary: "biorobots", config: "config/PhysiCell_settings.xml", max_time: 120, validation_output_folder: ""},
           {"use_physiboss": false, cwd: "build/sample_projects/celltypes3", name: "PhysiCell Celltypes3", binary: "celltypes3", config: "config/PhysiCell_settings.xml", max_time: 120, validation_output_folder: ""},

core/PhysiCell_cell.cpp

@@ -1079,7 +1079,7 @@ void Cell::add_potentials(Cell* other_agent)
 		state.neighbors.push_back(other_agent); // move here in 1.10.2 so non-adhesive cells also added. 
 	}
 	/////////////////////////////////////////////////////////////////
-	if( fabs(temp_r) < 1e-16 )
+	if( fabs(temp_r) < 1e-16 || is_movable == false )
 	{ return; }
 	temp_r /= distance;
 	// for( int i = 0 ; i < 3 ; i++ ) 

core/PhysiCell_cell_container.cpp

@@ -210,7 +210,7 @@ void Cell_Container::update_all_cells(double t, double phenotype_dt_ , double me
 		for( int i=0; i < (*all_cells).size(); i++ )
 		{
 			Cell* pC = (*all_cells)[i]; 
-			if( pC->functions.update_velocity && pC->is_out_of_domain == false && pC->is_movable )
+			if( pC->functions.update_velocity && pC->is_out_of_domain == false )
 			{ pC->functions.update_velocity( pC,pC->phenotype,time_since_last_mechanics ); }
 		}