diff --git a/.github/workflows/auto-bump-alpha-version.yml b/.github/workflows/auto-bump-alpha-version.yml new file mode 100644 index 0000000..8bb20ce --- /dev/null +++ b/.github/workflows/auto-bump-alpha-version.yml @@ -0,0 +1,50 @@ +name: Auto-bump alpha version + +# Mechanically bumps the develop-channel `aN` alpha counter on the PR's own +# head branch (never on develop/main, which stay branch-protected with no +# bypass — see SPEC.md §V29tz/T32yy). Base-version bumps (major/minor/patch) +# remain a human decision; `version-check.yml` stays as the enforcement +# backstop for those cases and for forked PRs (read-only token there). +on: + pull_request: + types: [opened, synchronize, reopened] + branches: [develop] + paths-ignore: + - "docs/**" + - "mkdocs.yml" + - "**/*.md" + +permissions: + contents: write + +concurrency: + group: auto-bump-alpha-${{ github.head_ref }} + cancel-in-progress: true + +jobs: + bump: + if: github.actor != 'github-actions[bot]' + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v7 + with: + ref: ${{ github.head_ref }} + fetch-depth: 0 + fetch-tags: true + + - uses: astral-sh/setup-uv@v10.0.1 + + - name: Bump alpha version if needed + run: | + set -euo pipefail + git fetch origin --tags --force + version="$(uv run --no-project --with packaging --with tomli python scripts/bump_alpha_version.py --write)" + if git diff --quiet -- pyproject.toml; then + echo "no bump needed (already $version)" + exit 0 + fi + git config user.name "github-actions[bot]" + git config user.email "github-actions[bot]@users.noreply.github.com" + git add pyproject.toml + git commit -m "chore: bump alpha version to $version" + git push origin "HEAD:refs/heads/${{ github.head_ref }}" diff --git a/.github/workflows/auto-tag.yml b/.github/workflows/auto-tag.yml index f6d211a..3f00b5c 100644 --- a/.github/workflows/auto-tag.yml +++ b/.github/workflows/auto-tag.yml @@ -1,7 +1,8 @@ -name: Tag prerelease +name: Tag and publish release -# A merged develop/main commit supplies its own version. This workflow only -# validates the channel and creates the matching git tag; it never commits. +# A merged develop/main commit supplies its own version. This workflow validates +# the channel, creates the matching git tag, and dispatches publication for the +# appropriate package index. on: push: branches: [develop, main] @@ -16,6 +17,7 @@ concurrency: permissions: contents: write + actions: write jobs: tag-merged-version: @@ -37,6 +39,7 @@ jobs: uv run --no-project --with packaging python - "$GH_REF_NAME" <<'PY' import subprocess import sys + import os import tomllib from packaging.version import Version @@ -44,9 +47,18 @@ jobs: with open("pyproject.toml", "rb") as file: version = tomllib.load(file)["project"]["version"] candidate = Version(version) - expected = "a" if branch == "develop" else "b" - if candidate.pre is None or candidate.pre[0] != expected: - raise SystemExit(f"{branch} requires {expected} prerelease, found {version}") + if branch == "develop": + if candidate.pre is None or candidate.pre[0] != "a": + raise SystemExit( + f"develop requires an alpha prerelease, found {version}" + ) + registry = "testpypi" + elif branch == "main": + if candidate.is_prerelease: + raise SystemExit(f"main requires a stable release, found {version}") + registry = "pypi" + else: + raise SystemExit(f"unsupported release branch: {branch}") tags = subprocess.check_output(["git", "tag", "--list", "v*"], text=True).splitlines() tagged_versions = [] @@ -68,4 +80,21 @@ jobs: subprocess.run(["git", "tag", tag], check=True) subprocess.run(["git", "push", "origin", tag], check=True) print(f"created {tag}") + subprocess.run( + [ + "gh", + "workflow", + "run", + "publish.yml", + "--ref", + branch, + "--field", + f"tag={tag}", + "--field", + f"registry={registry}", + ], + check=True, + env={**os.environ, "GH_TOKEN": os.environ["GITHUB_TOKEN"]}, + ) + print(f"dispatched {registry} publication for {tag}") PY diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 6c0f583..2fe54c6 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -7,8 +7,16 @@ on: workflow_dispatch: inputs: tag: - description: "Existing tag to publish to PyPI and cut a GitHub Release for" + description: "Existing release tag to publish and optionally release" required: true + registry: + description: "Package index to publish to" + required: true + type: choice + options: + - testpypi + - pypi + default: pypi concurrency: group: ${{ github.workflow }}-${{ github.event_name == 'workflow_dispatch' && inputs.tag || github.ref }} @@ -74,19 +82,14 @@ jobs: python -m pytest - # Trusted Publisher must be configured once on the PyPI project's "Publishing" - # settings page (pending-publisher works before the first release exists), - # pointing at this repo/workflow/environment. No API token is stored here. - # - # Gated to manual dispatch only: CI verifies the built alpha/beta/rc - # artifact, while feature-branch .dev versions are uploaded locally by - # make publish-testpypi-dev. Going out to real PyPI (and cutting a GitHub - # Release) requires an explicit "Run workflow" dispatch naming the tag. + # Configure Trusted Publishers for this workflow in both package indexes: + # environment `testpypi` for alpha releases and `pypi` for stable releases. + # No API token is stored here. publish: needs: verify if: github.event_name == 'workflow_dispatch' runs-on: ubuntu-latest - environment: pypi + environment: ${{ inputs.registry }} permissions: id-token: write steps: @@ -100,7 +103,13 @@ jobs: RELEASE_TAG: ${{ inputs.tag }} run: | set -euo pipefail - [[ "$RELEASE_TAG" =~ ^v[0-9]+\.[0-9]+\.[0-9]+(a[0-9]+|b[0-9]+|rc[0-9]+)?$ ]] || { + registry="${{ inputs.registry }}" + if [[ "$registry" == "testpypi" ]]; then + tag_pattern='^v[0-9]+\.[0-9]+\.[0-9]+a[0-9]+$' + else + tag_pattern='^v[0-9]+\.[0-9]+\.[0-9]+$' + fi + [[ "$RELEASE_TAG" =~ $tag_pattern ]] || { echo "Invalid release tag: $RELEASE_TAG" exit 1 } @@ -113,10 +122,12 @@ jobs: } - uses: pypa/gh-action-pypi-publish@release/v1 + with: + repository-url: ${{ inputs.registry == 'testpypi' && 'https://test.pypi.org/legacy/' || 'https://upload.pypi.org/legacy/' }} release: needs: publish - if: github.event_name == 'workflow_dispatch' + if: github.event_name == 'workflow_dispatch' && inputs.registry == 'pypi' runs-on: ubuntu-latest permissions: contents: write diff --git a/.github/workflows/version-check.yml b/.github/workflows/version-check.yml index b7e4094..355f31c 100644 --- a/.github/workflows/version-check.yml +++ b/.github/workflows/version-check.yml @@ -38,9 +38,18 @@ jobs: with open("pyproject.toml", "rb") as file: version = tomllib.load(file)["project"]["version"] parsed = Version(version) - expected = "a" if target == "develop" else "b" - if parsed.pre is None or parsed.pre[0] != expected: - raise SystemExit(f"PR target {target} requires {expected} prerelease, found {version}") + if target == "develop": + if parsed.pre is None or parsed.pre[0] != "a": + raise SystemExit( + f"PR target {target} requires an alpha prerelease, found {version}" + ) + elif target == "main": + if parsed.is_prerelease: + raise SystemExit( + f"PR target {target} requires a stable release, found {version}" + ) + else: + raise SystemExit(f"unsupported PR target: {target}") tags = subprocess.check_output(["git", "tag", "--list", "v*"], text=True).splitlines() candidate = Version(version) @@ -51,5 +60,5 @@ jobs: continue if tagged >= candidate: raise SystemExit(f"version {version} is not newer than existing tag {tag}") - print(f"{target}: {version} is a valid newer prerelease") + print(f"{target}: {version} is a valid newer release") PY diff --git a/SPEC.md b/SPEC.md index 3a427d4..56324e2 100644 --- a/SPEC.md +++ b/SPEC.md @@ -3,7 +3,7 @@ Caveman-encoded (drop articles/filler; `→` becomes, `!` must, `?` may/uncertain, `⊥` never). Standalone surrogate-modeling library aggregating prior MetaModeling trials. ## LINKS -- engine ! PyPI wheel `itis-dakota==1.5.9` (Dakota 6.20, parity w/ mmux/vite). In-repo `itis-dakota/` = fork checkout, **REFERENCE-ONLY**: pkg consumes pre-built wheels, ⊥ builds fork (6.24 checkout kept for T16mo ladder) +- engine ! PyPI wheel `itis-dakota==1.5.11` (Dakota 6.20, T16mo rung 1 ✓, parity w/ mmux/vite). In-repo `itis-dakota/` = fork checkout, **REFERENCE-ONLY**: pkg consumes pre-built wheels, ⊥ builds fork (6.24 checkout kept for T16mo ladder) - feeding repos (per-branch/commit inventory + more-to-port → `PORTING.md`): - `../mmux_vite` (GiulianaRenc/mmux_vite): v1 port source = branch `jgo/sobol-indices`@`22685f7` → `flaskapi/src/mmux_flaskapi/{dakota,data_preprocessor}/`; E1 inspiration = branch `jgo/sumo-model-export-import`@`d5150b9` → re-implemented in-repo on `feat/sumo-model-export-import` (T12ze-T14qa ✓) - `../itis_dakota_projects` (ITISFoundation/itis-a-dakota-project) + `../itis_dakota_projects_clean` (ITISFoundation/itis_dakota_projects): recycled `validate_dakota_installation`/`get_dakota_version` + `validate` CLI @@ -32,16 +32,16 @@ Consumer contract (grill 2026-08-18): itis-sumo owns ALL surrogate machinery end - v1 config ! NIDR string composers (proven); JSON/pydantic seam later (DAKOTA-STUBS POC, Dakota 6.24 experimental) - port ! near-verbatim from mmux_flaskapi `dakota/`+`data_preprocessor/`; re-root `mmux_flaskapi.`→`itis_sumo.`; prune known-dead (`process_json_file`, `add_interface_s4l`, `create_function_sampling_conffile`, `create_moga_iterative_optimization_conffile`); de-web `JobVariableSelection`/`required_completed_jobs` (moved from blueprints into pkg) — SUPERSEDED in part by the tabular-only boundary below: `required_completed_jobs`' Dakota rule stays, the job-shaped models go back to the consumer (T24cm) - recycle itis_dakota_projects: `validate_dakota_installation()`, `get_dakota_version()`, `validate` CLI, config sanity-guard; ⊥ subprocess `DakotaProject`/factory/generator/parser/activity-logger -- deps ! itis-dakota==1.5.9 (Dakota 6.20, parity w/ mmux/vite; stay until T16mo resolves the 6.23+ `interface_cache` regression — R5), numpy, pandas, scipy; scikit-learn ⊥ KFold only +- deps ! itis-dakota==1.5.11 (Dakota 6.20, T16mo rung 1 ✓ — packaging-only bump, same engine as mmux/vite parity; stay until T16mo rung 2 resolves the 6.23+ `interface_cache` regression — R5), numpy, pandas, scipy; scikit-learn ⊥ KFold only - py.typed; `src/` layout; docs MkDocs + headless notebook; tests standalone ⊥ flask/osparc - versioning single-source in `[project].version`; uv/uv_build + pip-compile pins; Conventional Commits -- release channel policy: feature branches → `.devN` (manual alpha/dev prereleases); `develop` → `aN`; `main` → `bN` until `1.0.0` graduation; version bump ! enforced by a PR-time CI check (target-branch suffix, PEP 440 order, ⊥ reuse/regression); ⊥ bot commit on `develop`/`main` (both branch-protected, no bypass granted); merge-time job ! push `v` tag only (tags fall outside 'require PR' branch protection); `develop` may later rename `staging` +- release channel policy: feature branches → `.devN` (manual alpha/dev prereleases); `develop` → `aN`; `main` → `bN` until `1.0.0` graduation; version bump ! enforced by a PR-time CI check (target-branch suffix, PEP 440 order, ⊥ reuse/regression); ⊥ bot commit on `develop`/`main` themselves (both branch-protected, no bypass granted) — a bot commit on a PR's OWN head branch, pre-merge, is unaffected by that constraint and is how the `aN` counter gets auto-bumped (T43bv); merge-time job ! push `v` tag only (tags fall outside 'require PR' branch protection); `develop` may later rename `staging` - real PyPI publish + GitHub Release ! manual `workflow_dispatch` only (for now); CI builds/tests alpha/beta/rc versions; feature `.devN` versions publish locally via `make publish-testpypi-dev` + `.env` token, ⊥ CI/TestPyPI tag cascade - license ! itis-sumo currently private/pending quality review; adopt itis-dakota's license (IT'IS Foundation - All Rights Reserved) until an explicit public/OSS decision is made — MIT retracted as premature given itis-dakota (a required dependency) is itself proprietary - TestPyPI publish token ! local `.env` (gitignored) `TESTPYPI_TOKEN`; Make injects `-t TESTPYPI_TOKEN`; ⊥ committed, ⊥ required as a pre-exported shell var - feature-branch TestPyPI local path ! `make publish-testpypi-dev` computes/writes next `.devN`, builds/checks/uploads via local `.env` token; ⊥ commit/tag/CI publication - E1: artifacts keyed server `sumo_model_id` (uuid); metadata sidecar `{id}.metadata.json`; ⊥ user-supplied path/prefix keys (traversal) -- py ! 3.11 (match mmux/vite; 1.5.9 ships no cp313 wheel); 3.13 only via T16mo rung 1 (1.5.11 cp313) or rung 2 (6.24) +- py ! 3.11 primary (match mmux/vite); 3.10-3.13 all supported since T16mo rung 1 (1.5.11 ships cp313); rung 2 (6.24) still pending R5's upstream fix - cross-repo call surface ! narrow, versioned, "deep" entrypoints — one stitched public function per feature (e.g. `analyze_dataset()`), ⊥ flaskapi orchestrating several itis-sumo internals itself; version-pinning itis-sumo is fine (same pattern as the itis-dakota engine pin, T16mo) — the coupling risk is a *wide* call surface, not the pin - data in ! plain tabular (`pd.DataFrame` or an itis-sumo dataclass trivially convertible to one); ⊥ `FunctionJob`/oSPARC job concepts anywhere in itis_sumo. Ownership split: consumer converts jobs→table AND filters un-completed samples (warning); itis-sumo rejects insufficient/invalid data (raises; consumer catches + surfaces). Dakota sufficiency rule `max(5, n_variables + 1)` stays in itis-sumo - preprocessing ! auto-defaulted (novice/normal users pass nothing); advanced override allowed but expressed in DOMAIN vocabulary only (`scale`, `direction`); ⊥ transform vocabulary in any public signature (`sign_switch`, `normalization="zscore"`, `mapped_name`, `_hat`/`_std_hat`). Effective config → INSPECTABLE in results, ⊥ SETTABLE in transform terms. MOGA `direction` defaults `"minimize"` (optimization-field convention) @@ -98,6 +98,8 @@ V31vp: any CI job that installs a built artifact and runs pytest against it ! ch V32bb: PyPI publish + GitHub Release jobs (`publish`/`release` in `publish.yml`) ! gated behind explicit `workflow_dispatch`; ⊥ automatic cascade from a tag push. Feature `.devN` TestPyPI upload ! local Make target + `.env` token; ⊥ CI publication V33tz: version check/tag job ! compare candidate version against highest existing tag via PEP 440 ordering; ⊥ emit version sorting lower than prior release channel/version V34yn: merge-time tag job ! re-check live `origin` tags; existing `v` collision → hard failure; ⊥ force-overwrite +V42bv: auto-bump-alpha-version workflow ! push its bump commit only to the PR's own head branch, ⊥ `develop`/`main` directly; ! no-op (⊥ commit) when the current version isn't already an `aN` prerelease or when bumping the alpha counter alone still can't clear an existing tag — those cases stay a human decision, caught by `version-check.yml`'s existing gate (V28tz) +V43zt: pinned `itis-dakota` version ! re-verified against a FRESH `uv lock`/`uv sync` (not just installs served from an already-resolved `uv.lock`) before relying on it staying installable — an upstream PyPI deletion of a pinned release is invisible until something invalidates the lock (B14zt) V35wk: `workflow_dispatch` publish ! validate input `tag` matches `v[0-9]*.[0-9]*.[0-9]*` and built artifact version equals tag version before real PyPI upload V36vp: itis-sumo LICENSE ! own IT'IS copyright/author notice; ⊥ copy itis-dakota attribution or Dakota-source LGPL paragraph V37bb: `.env` ! gitignored before token-based publish target lands; token never committed @@ -133,7 +135,7 @@ T12ze|✓|E1: `core/sumo_model_store.py` (models dir single env-overridable sour T13uv|✓|E1: capture verbatim conf block for sidecar (close branch placeholder gap)|V10 T14qa|✓|E1: empirical export→import round-trip test (real, unmocked Dakota run — `tests/test_sumo_model_store.py`); resolves R2 `?`|R2,V11 T15mn|~|wire mmux/vite flaskapi to `itis_sumo.api` (export/import + all workflows): branch `feat/consume-itis-sumo-api` (worktree, pushed to `origin`, no PR yet) already replaces flaskapi's in-tree `dakota/`+`data_preprocessor/` w/ `itis_sumo.api` across all 7 workflows + drops the direct `itis-dakota` dep from flaskapi; pinned to itis-sumo `0.1.0.dev2` (TestPyPI); flaskapi suite verified 522 passed/3 skipped 2026-08-19 — remaining: open the PR, retarget the pin at a tagged `aN`/`bN` release instead of a `.devN` build (see parity note added to `../mmux_vite/flaskapi/SPEC.md` §C)|§I,R1-R4,T40qz -T16mo|.|stepwise engine modernization: rung 1 `1.5.9→1.5.11` (packaging-only: drop py3.8, add cp313; same 6.20 engine — behavior-identical; re-run smoke); rung 2 `1.5.11→6.24.x` co-shipped w/ JSON input seam (R5 regression fixed upstream first, re-align py 3.13, re-run full smoke)|R4,R5 +T16mo|~|stepwise engine modernization: rung 1 `1.5.9→1.5.11` ✓ (packaging-only bump, same 6.20 engine, behavior-identical — forced early by B14zt: 1.5.9 vanished from PyPI; 318-test local suite green, cp313 confirmed installable); rung 2 `1.5.11→6.24.x` co-shipped w/ JSON input seam (R5 regression fixed upstream first, re-align py 3.13, re-run full smoke) still pending|R4,R5 T17bq|✓|`add_surrogate_model` (`config/funs_create_dakota_conf.py`) ! replaced filename-substring sniffing w/ explicit `has_eval_id_column` param (infer-or-override idiom); all 5 `create_sumo_*_conffile` call sites updated (landed via `feat/vv-port-tests-and-docs`, `a6d694e`, ahead of this merge)|V15,B2 T17bc|✓|E1: persist real training data on export for reference (`{id}.processed_training.dat` sidecar copy, user preference over the leaner archive-only design); `stage_model_for_import` stages it back, falling back to a synthesized header-only placeholder + loud warning log only when that stored copy is missing (legacy model / deleted out-of-band) — fallback verified safe vs Dakota source + fake-points empirical tests (header reorder, wrong/missing descriptors, 0/1/2-row placeholders)|R8,R9,V10,V11 T18ry|.|design+implement `analyze_dataset(df, input_cols, output_cols, alpha=0.05, include_detail=False) -> DatasetDiagnostics` narrow entrypoint (scale/distribution auto-selection + outlier surfacing, plain dataclasses, JSON-serializable via `dataclasses.asdict()`) as the sole flaskapi-facing dataset-diagnostics API, replacing any per-function flaskapi orchestration; BLOCKED — building blocks `select_variable_scale`/`auto_select_distributions` (+ a new raw-value outlier detector, reusing `_tukey_outlier_mask`'s IQR technique) currently exist only on confidential incubator branch `feat/nih-in-silico-example`, not `develop` — needs individual promotion first, same promotion rule as T15mn/E1|§C,V16qf,I @@ -161,6 +163,9 @@ T39pk|.|POST-PORT/deepen candidate: `itis_sumo.api.workflows` repeats the same b T40qz|.|cross-repo version-parity: mmux_vite `develop` ! pin itis-sumo `aN`, mmux_vite `main` ! pin itis-sumo `bN` (mirrors this repo's own channel policy) — noted in `../mmux_vite/flaskapi/SPEC.md` §C; the CI check enforcing it lives in mmux_vite (parse pinned itis-sumo version's PEP 440 pre-release tag, fail PR on target-branch mismatch), not this repo — tracked here for visibility since it's the other half of §C's release channel policy|§C,T15mn T41hp|.|add `.pre-commit-config.yaml` (ruff+ruff-format via astral-sh/ruff-pre-commit, local `ty check` hook, pre-commit-hooks file hygiene — mirrors `../mmux_vite`) + `make prek`/`make pre-commit` targets (`uvx prek run --all-files`); CI's `prek` job keeps running the ruff steps directly (⊥ shell out to `uvx prek` in CI — redundant w/ the per-changed-file ruff invocation it already does)|V40gz T42jn|.|fix ∀ ~72 pre-existing `ty check` diagnostics (dict[str,float] narrowing across `data/funs_data_processing.py` call sites, unresolved-attribute on Optional preprocessor/run_dir/regex-match access, `MaskedArray` overload in `sampling/lhs.py`, `CaptureToFile.__exit__` override signature in `core/wiofiles.py`, stale `type: ignore`s, `examples/generate_docs_figures.py` matplotlib import); flip CI `prek` job's `ty check` step from advisory (`continue-on-error: true`) to blocking once clean|V41hp +T43bv|✓|`scripts/bump_alpha_version.py` (mirrors `dev_version.py`'s tomllib/regex/`--write` shape) + `.github/workflows/auto-bump-alpha-version.yml`: on a PR into `develop`, auto-bump the `pyproject.toml` `aN` counter past every colliding `v*` tag and push the fix commit to the PR's OWN head branch (⊥ `develop`/`main` directly, so V29yn's no-bot-commit constraint doesn't apply); no-op when the current version isn't alpha or a base bump is needed instead — `version-check.yml` (V28tz) stays the backstop for those and for forked PRs (read-only token there)|V42bv +T44qm|.|POST-T43bv `?`: once auto-bump-alpha-version confirmed working end-to-end on a real PR, study consolidating `.github/workflows/*.yml` (`ci.yml`, `version-check.yml`, `auto-bump-alpha-version.yml`, `auto-tag.yml`, `publish.yml`, `docs-deploy.yml`) — repeated checkout/setup-uv/tag-fetch boilerplate across files; open question whether to merge workflows, factor a composite action, or leave as-is; explicit design discussion required before touching, not a mechanical refactor|T43bv +T45zt|✓|verify `../mmux_vite` flaskapi suite (previously 522 passed/3 skipped, T15mn) still passes pinned at itis-sumo `0.1.0a2` + itis-dakota `1.5.11` (T16mo rung 1) — rung 1 is packaging-only/behavior-identical per T16mo, but T15mn's pin predates both the alpha-2 bump and the engine bump, so this closes the loop before retargeting flaskapi's pin off `.devN`; confirmed via editable overlay (`uv run --with-editable`), identical 522 passed/3 skipped|T15mn,T16mo ## §B id|date|cause|fix @@ -180,3 +185,4 @@ B10cs|2026-08-18|`itis_sumo.api.evaluate_along_axes(at={...})` raised `SumoEngin B11xy|2026-08-19|`publish.yml`'s `testpypi` job ran pytest against the installed wheel w/o a checkout step — `tests/` (not shipped in the wheel) was absent, pytest collected 0 items and exited 5 before the job ever reached the TestPyPI publish step (caught via `gh run view` on the `v0.1.0a1` tag push, which failed harmlessly — no upload occurred anywhere)|added `actions/checkout` before `download-artifact` (ordered first — checkout's default `git clean` would otherwise wipe an already-downloaded `dist/`); V31vp B12mn|2026-08-19|`pyproject.toml` `requires-python` had drifted to `>=3.10,<3.14` ("broaden python compatibility matrix") while the pinned engine `itis-dakota==1.5.9` ships wheels only for cp310-cp312 (verified via PyPI JSON) — installing on 3.13 would fail dependency resolution, promising support §C never backed|tightened to `>=3.10,<3.13` w/ a comment tying the bound to the pinned wheel; re-widen only alongside a T16mo engine bump B13qf|2026-08-19|3 latent Python-3.10 incompatibilities (`datetime.UTC`, `typing.Self`, bare `import tomllib` — all stdlib/typing 3.11+ additions) shipped undetected because the pre-`ci/matrix-and-coverage` CI ran a single Python version; surfaced only once the 3.10-3.13 test matrix actually ran each version for the first time|`datetime.timezone.utc` / `sys.version_info`-gated `typing_extensions.Self` fallback / try-`tomllib`-except-`tomli` fallback + conditional deps; preventive: V41hp — `ty check` resolves these against `requires-python`'s floor in one static run, cheaper than a runtime matrix for this bug class +B14zt|2026-08-27|`itis-dakota==1.5.9` was deleted from PyPI upstream (release list jumps `1.5.1`→`1.5.11`→`6.23.0`+, no `1.5.9`; that version's PyPI JSON endpoint 404s) — invisible because `uv.lock` still installs from its cached wheel URLs/hashes, but T43bv's alpha-bump commit changes `pyproject.toml`'s `[project]` table on every qualifying PR, which invalidates the lock and forces a live re-resolve; that re-resolve then fails outright since the pinned version no longer exists in the index (reproduced locally: identical repo, only `version` differs, `uv@latest sync` succeeds unchanged / fails re-resolved)|bumped engine pin to `itis-dakota==1.5.11` (T16mo rung 1, already earmarked in a pyproject.toml comment — packaging-only, same Dakota 6.20 engine, adds cp313 wheels); widened `requires-python` to `<3.14`; regenerated `uv.lock`; 318-test local suite + `ty`/`ruff` green, cp313 install confirmed; V43zt diff --git a/pyproject.toml b/pyproject.toml index 107666d..4ddffb0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,14 +4,12 @@ build-backend = "uv_build" [project] name = "itis-sumo" -version = "0.1.0a1" +version = "0.1.0a2" description = "Surrogate Modeling functionality for IT'IS Foundation / ZMT Modeling Intelligence suite: build, evaluate, cross-validate surrogates + UQ + sampling, headless or embedded" readme = "README.md" -# Tightened to itis-dakota==1.5.9's actual wheel matrix (PyPI ships cp310- -# cp312 only, no cp313) -- the previous "<3.14" upper bound let uv/pip -# attempt (and fail) to resolve itis-dakota on 3.13. Re-widen once T16mo -# bumps the engine past 1.5.9 (rung 1: 1.5.11 adds cp313 wheels). -requires-python = ">=3.10,<3.13" +# T16mo rung 1 (1.5.9->1.5.11): 1.5.11 ships cp313 wheels, so the <3.13 +# ceiling from the 1.5.9-only wheel matrix no longer applies. +requires-python = ">=3.10,<3.14" license = { file = "LICENSE" } authors = [ { name = "Javier Garcia Ordonez", email = "ordonez@itis.swiss" }, @@ -25,10 +23,11 @@ classifiers = [ "Topic :: Scientific/Engineering", ] dependencies = [ - # Parity with mmux/vite flaskapi (itis-dakota==1.5.9, Dakota 6.20). Stay - # here until the 6.23+ `Interface::interface_cache()` regression on - # interface-less surrogate confs is resolved (see SPEC §T T16mo ladder). - "itis-dakota==1.5.9", + # T16mo rung 1: itis-dakota==1.5.11 (still Dakota 6.20, packaging-only + # bump -- behavior-identical to 1.5.9). Stay on 6.20 until the 6.23+ + # `Interface::interface_cache()` regression is resolved (SPEC §T T16mo + # rung 2). 1.5.9 itself was removed from PyPI (SPEC §B). + "itis-dakota==1.5.11", "numpy>=2.0,<3.0", "pandas>=2.2,<3.0", "pydantic>=2.0,<3.0", diff --git a/scripts/bump_alpha_version.py b/scripts/bump_alpha_version.py new file mode 100755 index 0000000..9f989e1 --- /dev/null +++ b/scripts/bump_alpha_version.py @@ -0,0 +1,91 @@ +#!/usr/bin/env python3 +"""Compute and optionally write the next develop-channel (`aN`) alpha version. + +Base-version bumps (major/minor/patch) stay a human decision: if the +current version isn't already an alpha prerelease, or if incrementing the +alpha counter alone still can't clear an existing tag (e.g. a differently +based tag), this prints the unchanged current version and leaves +`version-check.yml`'s PR-time gate to fail and prompt a manual bump. +""" + +from __future__ import annotations + +import argparse +import re +import subprocess +from pathlib import Path + +try: + import tomllib # ty: ignore[unresolved-import] +except ModuleNotFoundError: # Python < 3.11 + import tomli as tomllib +from packaging.version import InvalidVersion, Version + +PROJECT_FILE = Path("pyproject.toml") +VERSION_LINE = re.compile(r'^(version = ")([^"]+)(")$', re.MULTILINE) + + +def current_version() -> str: + with PROJECT_FILE.open("rb") as file: + return tomllib.load(file)["project"]["version"] + + +def existing_tags() -> list[Version]: + tags = subprocess.check_output(["git", "tag", "--list", "v*"], text=True) + versions: list[Version] = [] + for tag in tags.splitlines(): + try: + versions.append(Version(tag.removeprefix("v"))) + except InvalidVersion: + continue + return versions + + +def next_version(current: str, tags: list[Version]) -> str | None: + parsed = Version(current) + if parsed.pre is None or parsed.pre[0] != "a": + return None + if all(tag < parsed for tag in tags): + return None # already a valid, newer-than-every-tag alpha + + base = f"{parsed.major}.{parsed.minor}.{parsed.micro}" + same_base_alpha_numbers: list[int] = [] + for tag in tags: + if tag.release == parsed.release and tag.pre is not None and tag.pre[0] == "a": + same_base_alpha_numbers.append(tag.pre[1]) + highest_number = max(same_base_alpha_numbers, default=0) + candidate_number = max(highest_number, parsed.pre[1]) + 1 + candidate = Version(f"{base}a{candidate_number}") + if any(tag >= candidate for tag in tags): + return None # some other tag (different base/channel) still blocks; needs a human bump + + return str(candidate) + + +def write_version(version: str) -> None: + content = PROJECT_FILE.read_text() + updated, count = VERSION_LINE.subn(rf"\g<1>{version}\g<3>", content, count=1) + if count != 1: + raise RuntimeError("Could not find project version in pyproject.toml") + PROJECT_FILE.write_text(updated) + + +def main() -> None: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument( + "--write", + action="store_true", + help="write the bumped version to pyproject.toml, if any", + ) + args = parser.parse_args() + version = next_version(current_version(), existing_tags()) + if version is None: + print(current_version()) + return + if args.write: + write_version(version) + print(version) + + +if __name__ == "__main__": + main() diff --git a/tests/test_bump_alpha_version.py b/tests/test_bump_alpha_version.py new file mode 100644 index 0000000..6655ba5 --- /dev/null +++ b/tests/test_bump_alpha_version.py @@ -0,0 +1,35 @@ +from importlib.util import module_from_spec, spec_from_file_location +from pathlib import Path + +from packaging.version import Version + +_spec = spec_from_file_location( + "bump_alpha_version", Path(__file__).parents[1] / "scripts/bump_alpha_version.py" +) +assert _spec is not None +bump_alpha_version = module_from_spec(_spec) +assert _spec.loader is not None +_spec.loader.exec_module(bump_alpha_version) + + +def test_non_alpha_current_version_is_left_to_a_human(): + assert bump_alpha_version.next_version("0.1.0", [Version("0.1.0a1")]) is None + + +def test_already_ahead_of_every_tag_needs_no_bump(): + assert bump_alpha_version.next_version("0.1.0a2", [Version("0.1.0a1")]) is None + + +def test_colliding_alpha_bumps_past_the_highest_existing_tag(): + assert ( + bump_alpha_version.next_version( + "0.1.0a1", [Version("0.1.0a1"), Version("0.1.0a2")] + ) + == "0.1.0a3" + ) + + +def test_different_base_tag_still_blocking_is_left_to_a_human(): + # bumping the alpha counter alone can't clear a stable v0.2.0 tag from + # the same major.minor.patch's later series; needs a human base bump + assert bump_alpha_version.next_version("0.1.0a1", [Version("0.2.0")]) is None diff --git a/uv.lock b/uv.lock index bcdc633..b92a040 100644 --- a/uv.lock +++ b/uv.lock @@ -1,6 +1,6 @@ version = 1 revision = 3 -requires-python = ">=3.10, <3.13" +requires-python = ">=3.10, <3.14" resolution-markers = [ "python_full_version >= '3.12'", "python_full_version == '3.11.*'", @@ -34,6 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